Hb_003297_040

Information

Type -
Description -
Location Contig3297: 21349-23812
Sequence    

Annotation

kegg
ID rcu:RCOM_0024370
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_002527909.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SPJ0
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003297_040 0.0 - - Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_006856_020 0.1609618577 - - -
3 Hb_000832_350 0.1740717912 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_001496_020 0.178791283 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
5 Hb_011618_020 0.1870754938 - - hypothetical protein OsI_13615 [Oryza sativa Indica Group]
6 Hb_006261_010 0.2208301267 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
7 Hb_007757_090 0.2213039631 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
8 Hb_000946_020 0.2213544312 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
9 Hb_005625_050 0.2221158779 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
10 Hb_169597_010 0.2249262444 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
11 Hb_019299_050 0.2257397798 - - -
12 Hb_003927_030 0.2259923063 - - unnamed protein product [Coffea canephora]
13 Hb_000052_030 0.2262840051 - - -
14 Hb_002570_050 0.2324686169 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
15 Hb_000967_030 0.2371793591 - - -
16 Hb_138607_010 0.2385159677 - - hypothetical protein RCOM_0725500 [Ricinus communis]
17 Hb_093039_010 0.2387463326 - - JHL22C18.10 [Jatropha curcas]
18 Hb_000190_130 0.2401373111 - - cysteine protease inhibitor [Populus tremula]
19 Hb_002003_120 0.2403046033 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
20 Hb_000159_030 0.2440466571 - - putative glycosyltransferase, partial [Aralia elata]

Gene co-expression network

sample Hb_003297_040 Hb_003297_040 Hb_006856_020 Hb_006856_020 Hb_003297_040--Hb_006856_020 Hb_000832_350 Hb_000832_350 Hb_003297_040--Hb_000832_350 Hb_001496_020 Hb_001496_020 Hb_003297_040--Hb_001496_020 Hb_011618_020 Hb_011618_020 Hb_003297_040--Hb_011618_020 Hb_006261_010 Hb_006261_010 Hb_003297_040--Hb_006261_010 Hb_007757_090 Hb_007757_090 Hb_003297_040--Hb_007757_090 Hb_006856_020--Hb_000832_350 Hb_033286_020 Hb_033286_020 Hb_006856_020--Hb_033286_020 Hb_169514_010 Hb_169514_010 Hb_006856_020--Hb_169514_010 Hb_006856_020--Hb_011618_020 Hb_006856_020--Hb_001496_020 Hb_001799_220 Hb_001799_220 Hb_000832_350--Hb_001799_220 Hb_030370_010 Hb_030370_010 Hb_000832_350--Hb_030370_010 Hb_033908_010 Hb_033908_010 Hb_000832_350--Hb_033908_010 Hb_001496_140 Hb_001496_140 Hb_000832_350--Hb_001496_140 Hb_002003_120 Hb_002003_120 Hb_001496_020--Hb_002003_120 Hb_001496_020--Hb_000832_350 Hb_000072_040 Hb_000072_040 Hb_001496_020--Hb_000072_040 Hb_001496_020--Hb_033286_020 Hb_169597_010 Hb_169597_010 Hb_011618_020--Hb_169597_010 Hb_003927_030 Hb_003927_030 Hb_011618_020--Hb_003927_030 Hb_000052_030 Hb_000052_030 Hb_011618_020--Hb_000052_030 Hb_000946_020 Hb_000946_020 Hb_011618_020--Hb_000946_020 Hb_002570_050 Hb_002570_050 Hb_011618_020--Hb_002570_050 Hb_093039_010 Hb_093039_010 Hb_011618_020--Hb_093039_010 Hb_006261_010--Hb_007757_090 Hb_005625_050 Hb_005625_050 Hb_006261_010--Hb_005625_050 Hb_006261_010--Hb_000946_020 Hb_019299_050 Hb_019299_050 Hb_006261_010--Hb_019299_050 Hb_006261_010--Hb_169597_010 Hb_006261_010--Hb_003927_030 Hb_007757_090--Hb_005625_050 Hb_007757_090--Hb_019299_050 Hb_007757_090--Hb_000946_020 Hb_007757_090--Hb_169597_010 Hb_000967_030 Hb_000967_030 Hb_007757_090--Hb_000967_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0557395 0.0784509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.814449 0.481536

CAGE analysis