Hb_003299_010

Information

Type transcription factor
Description TF Family: HB
Location Contig3299: 19455-21664
Sequence    

Annotation

kegg
ID rcu:RCOM_0698700
description homeobox protein, putative
nr
ID XP_002520146.1
description homeobox protein, putative [Ricinus communis]
swissprot
ID Q02283
description Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1
trembl
ID B9S2C7
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_0698700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34650: 19538-22013
cDNA
(Sanger)
(ID:Location)		 017_D09.ab1: 19544-21027

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003299_010 0.0 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
2 Hb_005157_010 0.1399769996 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
3 Hb_000685_060 0.1403839406 - - ring finger protein, putative [Ricinus communis]
4 Hb_000189_120 0.1433060565 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
5 Hb_001584_010 0.1434803189 - - kelch repeat protein, putative [Ricinus communis]
6 Hb_003504_040 0.1501982595 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
7 Hb_133636_010 0.1518380677 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
8 Hb_007618_010 0.1618511857 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
9 Hb_002326_080 0.1705236961 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
10 Hb_005147_040 0.1715515833 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
11 Hb_002783_320 0.1721476595 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
12 Hb_000106_070 0.1725825451 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
13 Hb_000670_110 0.1741140705 - - l-asparaginase, putative [Ricinus communis]
14 Hb_000844_010 0.1783599832 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
15 Hb_000762_070 0.1799642042 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
16 Hb_001248_030 0.1804918067 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_164010_090 0.1827775612 - - cellulose synthase, putative [Ricinus communis]
18 Hb_067034_030 0.1860096729 - - ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_000215_340 0.1895117974 - - gamma glutamyl transpeptidases, putative [Ricinus communis]
20 Hb_005841_080 0.1895172596 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]

Gene co-expression network

sample Hb_003299_010 Hb_003299_010 Hb_005157_010 Hb_005157_010 Hb_003299_010--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_003299_010--Hb_000685_060 Hb_000189_120 Hb_000189_120 Hb_003299_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_003299_010--Hb_001584_010 Hb_003504_040 Hb_003504_040 Hb_003299_010--Hb_003504_040 Hb_133636_010 Hb_133636_010 Hb_003299_010--Hb_133636_010 Hb_005841_080 Hb_005841_080 Hb_005157_010--Hb_005841_080 Hb_005157_010--Hb_000685_060 Hb_001951_030 Hb_001951_030 Hb_005157_010--Hb_001951_030 Hb_005157_010--Hb_003504_040 Hb_005157_010--Hb_133636_010 Hb_000685_060--Hb_003504_040 Hb_001377_500 Hb_001377_500 Hb_000685_060--Hb_001377_500 Hb_000608_020 Hb_000608_020 Hb_000685_060--Hb_000608_020 Hb_000215_340 Hb_000215_340 Hb_000685_060--Hb_000215_340 Hb_000189_120--Hb_001584_010 Hb_000778_020 Hb_000778_020 Hb_000189_120--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_000189_120--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_000189_120--Hb_010253_020 Hb_057079_020 Hb_057079_020 Hb_000189_120--Hb_057079_020 Hb_000007_160 Hb_000007_160 Hb_000189_120--Hb_000007_160 Hb_001584_010--Hb_008175_030 Hb_001584_010--Hb_000778_020 Hb_001584_010--Hb_000007_160 Hb_003525_020 Hb_003525_020 Hb_001584_010--Hb_003525_020 Hb_002774_090 Hb_002774_090 Hb_003504_040--Hb_002774_090 Hb_067034_030 Hb_067034_030 Hb_003504_040--Hb_067034_030 Hb_008616_060 Hb_008616_060 Hb_003504_040--Hb_008616_060 Hb_000844_010 Hb_000844_010 Hb_133636_010--Hb_000844_010 Hb_002783_320 Hb_002783_320 Hb_133636_010--Hb_002783_320 Hb_011909_030 Hb_011909_030 Hb_133636_010--Hb_011909_030 Hb_007773_030 Hb_007773_030 Hb_133636_010--Hb_007773_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.97155 69.8731 4.41609 15.4552 3.19817 7.18869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.45919 3.02642 1.4675 47.5022 1.74268

CAGE analysis