Hb_003299_020

Information

Type -
Description -
Location Contig3299: 55316-57213
Sequence    

Annotation

kegg
ID rcu:RCOM_0698720
description hypothetical protein
nr
ID XP_012091955.1
description PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21708 PE=4 SV=1
Gene Ontology
ID GO:0009507
description xaa-pro aminopeptidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34653: 54962-57167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003299_020 0.0 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
2 Hb_005545_020 0.072513973 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
3 Hb_000753_110 0.0865572846 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
4 Hb_010672_050 0.1104558229 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
5 Hb_001377_530 0.1213230321 - - NC domain-containing family protein [Populus trichocarpa]
6 Hb_000009_420 0.1266945021 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
7 Hb_003398_040 0.1268838348 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
8 Hb_003050_360 0.1297814184 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
9 Hb_011174_040 0.1312761344 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001754_050 0.1349951499 - - protein arginine n-methyltransferase, putative [Ricinus communis]
11 Hb_002641_120 0.1354694435 - - PREDICTED: calmodulin [Jatropha curcas]
12 Hb_000186_030 0.1417485501 - - PREDICTED: uncharacterized protein LOC105649276 isoform X1 [Jatropha curcas]
13 Hb_004052_100 0.1420991884 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
14 Hb_004855_020 0.1427160549 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
15 Hb_000042_380 0.1436897349 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
16 Hb_000310_060 0.1459685807 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
17 Hb_002016_140 0.145987887 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
18 Hb_000002_350 0.1462018596 transcription factor TF Family: SNF2 DNA repair helicase rad5,16, putative [Ricinus communis]
19 Hb_001675_270 0.1463294283 - - PREDICTED: probable inactive nicotinamidase At3g16190 [Jatropha curcas]
20 Hb_000731_210 0.1473777419 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003299_020 Hb_003299_020 Hb_005545_020 Hb_005545_020 Hb_003299_020--Hb_005545_020 Hb_000753_110 Hb_000753_110 Hb_003299_020--Hb_000753_110 Hb_010672_050 Hb_010672_050 Hb_003299_020--Hb_010672_050 Hb_001377_530 Hb_001377_530 Hb_003299_020--Hb_001377_530 Hb_000009_420 Hb_000009_420 Hb_003299_020--Hb_000009_420 Hb_003398_040 Hb_003398_040 Hb_003299_020--Hb_003398_040 Hb_000042_380 Hb_000042_380 Hb_005545_020--Hb_000042_380 Hb_005545_020--Hb_000753_110 Hb_001754_050 Hb_001754_050 Hb_005545_020--Hb_001754_050 Hb_004883_020 Hb_004883_020 Hb_005545_020--Hb_004883_020 Hb_007575_030 Hb_007575_030 Hb_005545_020--Hb_007575_030 Hb_002641_120 Hb_002641_120 Hb_000753_110--Hb_002641_120 Hb_000310_060 Hb_000310_060 Hb_000753_110--Hb_000310_060 Hb_000753_110--Hb_000009_420 Hb_000186_030 Hb_000186_030 Hb_000753_110--Hb_000186_030 Hb_000753_110--Hb_003398_040 Hb_005333_080 Hb_005333_080 Hb_010672_050--Hb_005333_080 Hb_001019_160 Hb_001019_160 Hb_010672_050--Hb_001019_160 Hb_012760_090 Hb_012760_090 Hb_010672_050--Hb_012760_090 Hb_000735_060 Hb_000735_060 Hb_010672_050--Hb_000735_060 Hb_011174_040 Hb_011174_040 Hb_010672_050--Hb_011174_040 Hb_003050_360 Hb_003050_360 Hb_001377_530--Hb_003050_360 Hb_001377_530--Hb_002641_120 Hb_001377_530--Hb_003398_040 Hb_001123_310 Hb_001123_310 Hb_001377_530--Hb_001123_310 Hb_001408_170 Hb_001408_170 Hb_001377_530--Hb_001408_170 Hb_000009_420--Hb_003398_040 Hb_000416_190 Hb_000416_190 Hb_000009_420--Hb_000416_190 Hb_000009_420--Hb_000310_060 Hb_010868_040 Hb_010868_040 Hb_000009_420--Hb_010868_040 Hb_003398_040--Hb_000310_060 Hb_001587_040 Hb_001587_040 Hb_003398_040--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_003398_040--Hb_005527_060 Hb_003398_040--Hb_010868_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.297583 3.11909 12.006 8.99017 0.0770906 0.117442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01504 1.15089 1.3258 6.14698 6.1028

CAGE analysis