Hb_003299_030

Information

Type -
Description -
Location Contig3299: 58518-60086
Sequence    

Annotation

kegg
ID tcc:TCM_009958
description Homeobox-leucine zipper protein ATHB-54
nr
ID XP_012091956.1
description PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
swissprot
ID P0CJ66
description Uncharacterized protein At1g27050 OS=Arabidopsis thaliana GN=At1g27050 PE=2 SV=1
trembl
ID A0A067JBR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21707 PE=4 SV=1
Gene Ontology
ID GO:0000166
description homeobox-leucine zipper protein athb-54

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34655: 58628-60121 , PASA_asmbl_34656: 58745-59535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003299_030 0.0 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
2 Hb_002043_090 0.0583814885 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
3 Hb_000457_050 0.080964401 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
4 Hb_008511_030 0.08291329 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
5 Hb_002272_020 0.0835607062 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
6 Hb_111198_010 0.0844113215 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
7 Hb_003086_190 0.0953328995 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
8 Hb_001377_070 0.097085377 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007403_050 0.0976706772 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
10 Hb_002530_010 0.0996105912 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
11 Hb_033095_020 0.1000085672 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002025_110 0.1005728502 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
13 Hb_000261_220 0.1006951932 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
14 Hb_011386_040 0.1019459804 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
15 Hb_032202_110 0.1025598894 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
16 Hb_000939_060 0.1033309163 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
17 Hb_000140_080 0.1043406611 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
18 Hb_000084_030 0.1047642072 - - conserved hypothetical protein [Ricinus communis]
19 Hb_052764_050 0.1051851919 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
20 Hb_000394_190 0.1056834388 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003299_030 Hb_003299_030 Hb_002043_090 Hb_002043_090 Hb_003299_030--Hb_002043_090 Hb_000457_050 Hb_000457_050 Hb_003299_030--Hb_000457_050 Hb_008511_030 Hb_008511_030 Hb_003299_030--Hb_008511_030 Hb_002272_020 Hb_002272_020 Hb_003299_030--Hb_002272_020 Hb_111198_010 Hb_111198_010 Hb_003299_030--Hb_111198_010 Hb_003086_190 Hb_003086_190 Hb_003299_030--Hb_003086_190 Hb_011386_040 Hb_011386_040 Hb_002043_090--Hb_011386_040 Hb_002043_090--Hb_000457_050 Hb_000261_250 Hb_000261_250 Hb_002043_090--Hb_000261_250 Hb_000563_330 Hb_000563_330 Hb_002043_090--Hb_000563_330 Hb_002045_150 Hb_002045_150 Hb_002043_090--Hb_002045_150 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_000457_050--Hb_008511_030 Hb_000283_130 Hb_000283_130 Hb_000457_050--Hb_000283_130 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_031527_020 Hb_031527_020 Hb_008511_030--Hb_031527_020 Hb_005489_080 Hb_005489_080 Hb_008511_030--Hb_005489_080 Hb_000140_080 Hb_000140_080 Hb_008511_030--Hb_000140_080 Hb_033095_020 Hb_033095_020 Hb_008511_030--Hb_033095_020 Hb_000959_270 Hb_000959_270 Hb_008511_030--Hb_000959_270 Hb_002272_020--Hb_111198_010 Hb_000076_160 Hb_000076_160 Hb_002272_020--Hb_000076_160 Hb_002078_220 Hb_002078_220 Hb_002272_020--Hb_002078_220 Hb_003117_020 Hb_003117_020 Hb_002272_020--Hb_003117_020 Hb_001946_040 Hb_001946_040 Hb_002272_020--Hb_001946_040 Hb_111198_010--Hb_031527_020 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_111198_010--Hb_005489_080 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_005188_060 Hb_005188_060 Hb_003086_190--Hb_005188_060 Hb_000116_060 Hb_000116_060 Hb_003086_190--Hb_000116_060 Hb_000230_430 Hb_000230_430 Hb_003086_190--Hb_000230_430 Hb_001243_060 Hb_001243_060 Hb_003086_190--Hb_001243_060 Hb_009780_100 Hb_009780_100 Hb_003086_190--Hb_009780_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.9498 57.5886 36.7619 22.9063 38.1716 53.1534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2471 31.1093 18.3128 16.2483 7.60268

CAGE analysis