Hb_003299_090

Information

Type -
Description -
Location Contig3299: 135392-136890
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011647mg
description hypothetical protein
nr
ID XP_007223466.1
description hypothetical protein PRUPE_ppa011647mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5XZE3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011647mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34668: 124647-137241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003299_090 0.0 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
2 Hb_005635_010 0.0808625818 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
3 Hb_005914_090 0.091910515 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
4 Hb_000347_150 0.0996968807 - - Nucleolysin TIAR [Morus notabilis]
5 Hb_001307_140 0.1049515543 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
6 Hb_000270_020 0.110889408 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
7 Hb_012016_020 0.1125607999 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
8 Hb_110364_010 0.1129361328 - - gamma-tubulin complex component, putative [Ricinus communis]
9 Hb_000017_340 0.1139901777 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
10 Hb_139859_010 0.1148273383 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
11 Hb_001040_160 0.1158493545 - - glutaredoxin, grx, putative [Ricinus communis]
12 Hb_000078_100 0.1163077946 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
13 Hb_000814_090 0.1183137519 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002046_040 0.1187178609 - - PREDICTED: topless-related protein 4 [Malus domestica]
15 Hb_001431_070 0.1187282369 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
16 Hb_000453_080 0.1203534164 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000209_020 0.120527925 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
18 Hb_002341_030 0.1212468009 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
19 Hb_063047_010 0.1224428842 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
20 Hb_001582_030 0.1233484398 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]

Gene co-expression network

sample Hb_003299_090 Hb_003299_090 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_005914_090 Hb_005914_090 Hb_003299_090--Hb_005914_090 Hb_000347_150 Hb_000347_150 Hb_003299_090--Hb_000347_150 Hb_001307_140 Hb_001307_140 Hb_003299_090--Hb_001307_140 Hb_000270_020 Hb_000270_020 Hb_003299_090--Hb_000270_020 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020 Hb_000814_090 Hb_000814_090 Hb_005635_010--Hb_000814_090 Hb_005295_040 Hb_005295_040 Hb_005635_010--Hb_005295_040 Hb_001040_160 Hb_001040_160 Hb_005635_010--Hb_001040_160 Hb_002725_070 Hb_002725_070 Hb_005635_010--Hb_002725_070 Hb_000078_100 Hb_000078_100 Hb_005635_010--Hb_000078_100 Hb_000453_080 Hb_000453_080 Hb_005914_090--Hb_000453_080 Hb_005914_090--Hb_012016_020 Hb_005914_090--Hb_000347_150 Hb_001431_070 Hb_001431_070 Hb_005914_090--Hb_001431_070 Hb_139859_010 Hb_139859_010 Hb_005914_090--Hb_139859_010 Hb_000347_150--Hb_000270_020 Hb_000453_270 Hb_000453_270 Hb_000347_150--Hb_000453_270 Hb_000035_120 Hb_000035_120 Hb_000347_150--Hb_000035_120 Hb_000347_150--Hb_001307_140 Hb_110364_010 Hb_110364_010 Hb_001307_140--Hb_110364_010 Hb_063047_010 Hb_063047_010 Hb_001307_140--Hb_063047_010 Hb_001307_140--Hb_001040_160 Hb_000568_040 Hb_000568_040 Hb_001307_140--Hb_000568_040 Hb_001307_140--Hb_000453_270 Hb_001943_010 Hb_001943_010 Hb_001307_140--Hb_001943_010 Hb_000575_080 Hb_000575_080 Hb_000270_020--Hb_000575_080 Hb_000270_020--Hb_001307_140 Hb_003073_210 Hb_003073_210 Hb_000270_020--Hb_003073_210 Hb_000270_020--Hb_139859_010 Hb_002341_030 Hb_002341_030 Hb_012016_020--Hb_002341_030 Hb_001871_040 Hb_001871_040 Hb_012016_020--Hb_001871_040 Hb_012016_020--Hb_000453_080 Hb_005399_010 Hb_005399_010 Hb_012016_020--Hb_005399_010 Hb_000906_060 Hb_000906_060 Hb_012016_020--Hb_000906_060 Hb_008528_010 Hb_008528_010 Hb_012016_020--Hb_008528_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
491.097 397.889 24.3103 132.458 555.851 1171.32
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
311.442 202.883 268.358 280.052 58.3437

CAGE analysis