Hb_003304_020

Information

Type -
Description -
Location Contig3304: 15742-20901
Sequence    

Annotation

kegg
ID gmx:100801446
description polyadenylate-binding protein RBP47C-like
nr
ID KHN22302.1
description Polyadenylate-binding protein RBP47C [Glycine soja]
swissprot
ID Q9SX79
description Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1
trembl
ID A0A0B2QRK5
description Polyadenylate-binding protein RBP47C OS=Glycine soja GN=glysoja_022058 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein rbp47-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34714: 15921-21099 , PASA_asmbl_34717: 18840-18959
cDNA
(Sanger)
(ID:Location)		 015_N22.ab1: 15921-17467 , 027_H23.ab1: 15921-17510 , 028_F24.ab1: 15921-17500 , 051_L23.ab1: 15921-17503

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003304_020 0.0 - - Polyadenylate-binding protein RBP47C [Glycine soja]
2 Hb_000003_230 0.0421629835 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
3 Hb_004058_030 0.0464129221 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
4 Hb_003582_060 0.0551083258 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
5 Hb_007676_080 0.0617626954 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
6 Hb_003052_190 0.0639578473 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
7 Hb_002681_100 0.0672906825 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
8 Hb_000340_180 0.0689801113 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
9 Hb_001300_150 0.0701180106 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
10 Hb_000684_380 0.0703806907 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
11 Hb_000236_040 0.0743724348 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
12 Hb_006615_240 0.0744165946 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
13 Hb_000460_030 0.074507111 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
14 Hb_024439_010 0.0745458267 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
15 Hb_000768_090 0.0761507909 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase isoform X1 [Jatropha curcas]
16 Hb_000827_050 0.0762854751 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
17 Hb_004162_130 0.0763145979 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001511_060 0.0769852372 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
19 Hb_000288_030 0.0772359573 - - PREDICTED: syntaxin-32 [Jatropha curcas]
20 Hb_000035_180 0.077320817 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003304_020 Hb_003304_020 Hb_000003_230 Hb_000003_230 Hb_003304_020--Hb_000003_230 Hb_004058_030 Hb_004058_030 Hb_003304_020--Hb_004058_030 Hb_003582_060 Hb_003582_060 Hb_003304_020--Hb_003582_060 Hb_007676_080 Hb_007676_080 Hb_003304_020--Hb_007676_080 Hb_003052_190 Hb_003052_190 Hb_003304_020--Hb_003052_190 Hb_002681_100 Hb_002681_100 Hb_003304_020--Hb_002681_100 Hb_000003_230--Hb_007676_080 Hb_000003_230--Hb_003582_060 Hb_006573_190 Hb_006573_190 Hb_000003_230--Hb_006573_190 Hb_006615_240 Hb_006615_240 Hb_000003_230--Hb_006615_240 Hb_000003_230--Hb_004058_030 Hb_004058_030--Hb_002681_100 Hb_004058_030--Hb_006615_240 Hb_004058_030--Hb_003582_060 Hb_000684_380 Hb_000684_380 Hb_004058_030--Hb_000684_380 Hb_003582_060--Hb_006615_240 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_002169_040 Hb_002169_040 Hb_007676_080--Hb_002169_040 Hb_000390_300 Hb_000390_300 Hb_007676_080--Hb_000390_300 Hb_008494_100 Hb_008494_100 Hb_007676_080--Hb_008494_100 Hb_007676_080--Hb_006573_190 Hb_003052_190--Hb_003582_060 Hb_001245_100 Hb_001245_100 Hb_003052_190--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_003052_190--Hb_001163_050 Hb_000205_090 Hb_000205_090 Hb_003052_190--Hb_000205_090 Hb_003052_190--Hb_000003_230 Hb_003057_060 Hb_003057_060 Hb_002681_100--Hb_003057_060 Hb_013575_010 Hb_013575_010 Hb_002681_100--Hb_013575_010 Hb_001511_060 Hb_001511_060 Hb_002681_100--Hb_001511_060 Hb_002681_100--Hb_006573_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.674 9.71387 16.0698 13.8378 9.58057 11.7369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.681 21.8931 18.7855 14.636 10.2899

CAGE analysis