Hb_003304_040

Information

Type -
Description -
Location Contig3304: 28491-29387
Sequence    

Annotation

kegg
ID cic:CICLE_v10003343mg
description hypothetical protein
nr
ID XP_006434837.1
description hypothetical protein CICLE_v10003343mg, partial [Citrus clementina]
swissprot
ID P52711
description Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1
trembl
ID V4T4G1
description Carboxypeptidase (Fragment) OS=Citrus clementina GN=CICLE_v10003343mg PE=3 SV=1
Gene Ontology
ID GO:0004180
description serine carboxypeptidase ii-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003304_040 0.0 - - hypothetical protein CICLE_v10003343mg, partial [Citrus clementina]
2 Hb_007192_110 0.0791259964 - - -
3 Hb_121031_010 0.304751808 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
4 Hb_034050_010 0.3049203668 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
5 Hb_000875_100 0.3102513297 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
6 Hb_004162_300 0.3135547494 - - monovalent cation:proton antiporter, putative [Ricinus communis]
7 Hb_027014_010 0.3154006395 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_002918_190 0.3203263319 - - Uncharacterized protein TCM_029816 [Theobroma cacao]
9 Hb_163115_010 0.3271372892 - - -
10 Hb_183366_010 0.3436286847 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
11 Hb_001809_040 0.3496902837 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
12 Hb_082195_010 0.3512797424 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
13 Hb_001014_200 0.3574301541 - - -
14 Hb_000599_060 0.3578693869 - - PREDICTED: legumin A-like [Jatropha curcas]
15 Hb_003849_090 0.3672716446 - - -
16 Hb_147123_010 0.3699619876 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
17 Hb_004532_010 0.372157057 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
18 Hb_002498_190 0.3745116203 - - -
19 Hb_048110_010 0.3821455868 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
20 Hb_000981_040 0.3825389687 - - -

Gene co-expression network

sample Hb_003304_040 Hb_003304_040 Hb_007192_110 Hb_007192_110 Hb_003304_040--Hb_007192_110 Hb_121031_010 Hb_121031_010 Hb_003304_040--Hb_121031_010 Hb_034050_010 Hb_034050_010 Hb_003304_040--Hb_034050_010 Hb_000875_100 Hb_000875_100 Hb_003304_040--Hb_000875_100 Hb_004162_300 Hb_004162_300 Hb_003304_040--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_003304_040--Hb_027014_010 Hb_007192_110--Hb_027014_010 Hb_007192_110--Hb_004162_300 Hb_163115_010 Hb_163115_010 Hb_007192_110--Hb_163115_010 Hb_007192_110--Hb_034050_010 Hb_183366_010 Hb_183366_010 Hb_007192_110--Hb_183366_010 Hb_121031_010--Hb_034050_010 Hb_121031_010--Hb_000875_100 Hb_121031_010--Hb_004162_300 Hb_121031_010--Hb_027014_010 Hb_121031_010--Hb_163115_010 Hb_121031_010--Hb_183366_010 Hb_034050_010--Hb_004162_300 Hb_034050_010--Hb_000875_100 Hb_034050_010--Hb_027014_010 Hb_034050_010--Hb_163115_010 Hb_034050_010--Hb_183366_010 Hb_001014_200 Hb_001014_200 Hb_000875_100--Hb_001014_200 Hb_000875_100--Hb_004162_300 Hb_000875_100--Hb_027014_010 Hb_000875_100--Hb_163115_010 Hb_004162_300--Hb_027014_010 Hb_004162_300--Hb_163115_010 Hb_004162_300--Hb_183366_010 Hb_001809_040 Hb_001809_040 Hb_004162_300--Hb_001809_040 Hb_027014_010--Hb_163115_010 Hb_027014_010--Hb_183366_010 Hb_027014_010--Hb_001809_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0536629 0 0.136491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118612 0 0 0 0

CAGE analysis