Hb_003304_050

Information

Type -
Description -
Location Contig3304: 38139-41372
Sequence    

Annotation

kegg
ID rcu:RCOM_1591860
description transcription factor, putative
nr
ID XP_012071700.1
description PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04318 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34724: 37788-39747 , PASA_asmbl_34725: 39944-41013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003304_050 0.0 - - PREDICTED: uncharacterized protein LOC105633679 isoform X1 [Jatropha curcas]
2 Hb_003687_200 0.1210123389 - - PREDICTED: uncharacterized protein LOC105632139 [Jatropha curcas]
3 Hb_000641_030 0.1216323236 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
4 Hb_000548_030 0.1587047628 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
5 Hb_026447_030 0.1611972086 - - hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
6 Hb_003654_010 0.16367903 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
7 Hb_002027_220 0.1693452203 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_000347_080 0.1901085108 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
9 Hb_000056_120 0.1925412706 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_004724_430 0.1933778757 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
11 Hb_001565_100 0.1955799326 - - unnamed protein product [Coffea canephora]
12 Hb_027380_040 0.1984840251 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
13 Hb_001956_120 0.2002322082 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005590_030 0.2015087487 - - PREDICTED: (S)-coclaurine N-methyltransferase [Jatropha curcas]
15 Hb_002078_430 0.2044612168 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
16 Hb_000416_100 0.2046856992 - - PREDICTED: uncharacterized protein LOC105649721 [Jatropha curcas]
17 Hb_001916_130 0.2066150351 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
18 Hb_012977_010 0.2066828104 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
19 Hb_000365_090 0.2072304551 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_000373_290 0.2095064114 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]

Gene co-expression network

sample Hb_003304_050 Hb_003304_050 Hb_003687_200 Hb_003687_200 Hb_003304_050--Hb_003687_200 Hb_000641_030 Hb_000641_030 Hb_003304_050--Hb_000641_030 Hb_000548_030 Hb_000548_030 Hb_003304_050--Hb_000548_030 Hb_026447_030 Hb_026447_030 Hb_003304_050--Hb_026447_030 Hb_003654_010 Hb_003654_010 Hb_003304_050--Hb_003654_010 Hb_002027_220 Hb_002027_220 Hb_003304_050--Hb_002027_220 Hb_003687_200--Hb_000641_030 Hb_017111_010 Hb_017111_010 Hb_003687_200--Hb_017111_010 Hb_000186_100 Hb_000186_100 Hb_003687_200--Hb_000186_100 Hb_000009_640 Hb_000009_640 Hb_003687_200--Hb_000009_640 Hb_000416_100 Hb_000416_100 Hb_003687_200--Hb_000416_100 Hb_000376_110 Hb_000376_110 Hb_000641_030--Hb_000376_110 Hb_000376_150 Hb_000376_150 Hb_000641_030--Hb_000376_150 Hb_000920_140 Hb_000920_140 Hb_000641_030--Hb_000920_140 Hb_000641_030--Hb_000416_100 Hb_000548_030--Hb_000641_030 Hb_100414_010 Hb_100414_010 Hb_000548_030--Hb_100414_010 Hb_000139_330 Hb_000139_330 Hb_000548_030--Hb_000139_330 Hb_000959_360 Hb_000959_360 Hb_000548_030--Hb_000959_360 Hb_000548_030--Hb_003654_010 Hb_000365_090 Hb_000365_090 Hb_026447_030--Hb_000365_090 Hb_026447_030--Hb_002027_220 Hb_004724_430 Hb_004724_430 Hb_026447_030--Hb_004724_430 Hb_000086_200 Hb_000086_200 Hb_026447_030--Hb_000086_200 Hb_001268_210 Hb_001268_210 Hb_026447_030--Hb_001268_210 Hb_028358_010 Hb_028358_010 Hb_003654_010--Hb_028358_010 Hb_003654_010--Hb_002027_220 Hb_000956_130 Hb_000956_130 Hb_003654_010--Hb_000956_130 Hb_004705_040 Hb_004705_040 Hb_003654_010--Hb_004705_040 Hb_004007_160 Hb_004007_160 Hb_003654_010--Hb_004007_160 Hb_002027_220--Hb_001268_210 Hb_135810_010 Hb_135810_010 Hb_002027_220--Hb_135810_010 Hb_000120_240 Hb_000120_240 Hb_002027_220--Hb_000120_240 Hb_012977_010 Hb_012977_010 Hb_002027_220--Hb_012977_010 Hb_012390_010 Hb_012390_010 Hb_002027_220--Hb_012390_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.501 5.46513 13.4688 26.5986 44.6478 45.1305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.0699 12.5279 5.59973 1.03051 2.89235

CAGE analysis