Hb_003304_080

Information

Type transcription factor
Description TF Family: bHLH
Location Contig3304: 100076-101503
Sequence    

Annotation

kegg
ID rcu:RCOM_1313580
description DNA binding protein, putative (EC:1.3.1.74)
nr
ID AEG74013.1
description lMYC3 [Hevea brasiliensis]
swissprot
ID O49687
description Transcription factor MYC4 OS=Arabidopsis thaliana GN=MYC4 PE=1 SV=1
trembl
ID I3NR01
description LMYC3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0032440
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003304_080 0.0 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
2 Hb_007810_040 0.0620368603 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
3 Hb_000050_120 0.0654930677 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
4 Hb_002078_040 0.0800076803 - - protein with unknown function [Ricinus communis]
5 Hb_095397_010 0.0934183363 - - hypothetical protein 25 [Hevea brasiliensis]
6 Hb_043637_010 0.1067603472 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
7 Hb_012654_020 0.1109893742 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000376_150 0.1111155391 - - O-acyltransferase WSD1 [Gossypium arboreum]
9 Hb_003906_120 0.1129410488 - - -
10 Hb_002172_030 0.1138538797 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
11 Hb_002232_180 0.115387128 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
12 Hb_011609_190 0.1160593082 - - 14-3-3 protein 2 [Hevea brasiliensis]
13 Hb_001628_110 0.1196852532 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
14 Hb_004738_090 0.1200359774 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007178_010 0.120138104 - - pseudo-hevein [Hevea brasiliensis]
16 Hb_003507_020 0.1230386344 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
17 Hb_002875_090 0.1252995944 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_010368_070 0.1254307749 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001454_390 0.1257917542 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
20 Hb_000365_350 0.1264083849 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]

Gene co-expression network

sample Hb_003304_080 Hb_003304_080 Hb_007810_040 Hb_007810_040 Hb_003304_080--Hb_007810_040 Hb_000050_120 Hb_000050_120 Hb_003304_080--Hb_000050_120 Hb_002078_040 Hb_002078_040 Hb_003304_080--Hb_002078_040 Hb_095397_010 Hb_095397_010 Hb_003304_080--Hb_095397_010 Hb_043637_010 Hb_043637_010 Hb_003304_080--Hb_043637_010 Hb_012654_020 Hb_012654_020 Hb_003304_080--Hb_012654_020 Hb_007178_010 Hb_007178_010 Hb_007810_040--Hb_007178_010 Hb_002232_180 Hb_002232_180 Hb_007810_040--Hb_002232_180 Hb_007810_040--Hb_002078_040 Hb_007810_040--Hb_095397_010 Hb_007810_040--Hb_043637_010 Hb_000050_120--Hb_002078_040 Hb_000365_350 Hb_000365_350 Hb_000050_120--Hb_000365_350 Hb_002172_030 Hb_002172_030 Hb_000050_120--Hb_002172_030 Hb_000050_120--Hb_012654_020 Hb_000050_120--Hb_007810_040 Hb_002078_040--Hb_012654_020 Hb_002078_040--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_002078_040--Hb_154381_050 Hb_003906_120 Hb_003906_120 Hb_095397_010--Hb_003906_120 Hb_095397_010--Hb_002232_180 Hb_095397_010--Hb_000050_120 Hb_095397_010--Hb_043637_010 Hb_170116_010 Hb_170116_010 Hb_043637_010--Hb_170116_010 Hb_003507_020 Hb_003507_020 Hb_043637_010--Hb_003507_020 Hb_000603_200 Hb_000603_200 Hb_043637_010--Hb_000603_200 Hb_001628_110 Hb_001628_110 Hb_043637_010--Hb_001628_110 Hb_012654_020--Hb_002172_030 Hb_005410_010 Hb_005410_010 Hb_012654_020--Hb_005410_010 Hb_011609_190 Hb_011609_190 Hb_012654_020--Hb_011609_190 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
158.637 6.11931 3.61593 10.1054 161.84 96.059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.6645 40.4119 49.8361 4.41466 4.01736

CAGE analysis