Hb_003305_030

Information

Type -
Description -
Location Contig3305: 13128-13466
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003305_030 0.0 - - -
2 Hb_002250_050 0.1387329832 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]
3 Hb_041895_040 0.143727672 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000692_210 0.1484096198 - - PREDICTED: 24-methylenesterol C-methyltransferase 2 [Jatropha curcas]
5 Hb_000438_090 0.1501717773 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
6 Hb_171718_020 0.1523374677 - - hypothetical protein JCGZ_00274 [Jatropha curcas]
7 Hb_164945_010 0.1552985788 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
8 Hb_010789_020 0.1555967164 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
9 Hb_156635_020 0.1562765009 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
10 Hb_000000_340 0.1564995751 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
11 Hb_003835_090 0.1619486537 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 [Jatropha curcas]
12 Hb_001135_030 0.1623649039 - - PREDICTED: interaptin-like [Jatropha curcas]
13 Hb_007136_010 0.1634751451 desease resistance Gene Name: UBA PREDICTED: ATPase WRNIP1 [Jatropha curcas]
14 Hb_005000_140 0.1646631538 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
15 Hb_000523_030 0.1652043698 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
16 Hb_089140_120 0.168724185 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
17 Hb_001255_010 0.1710952673 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
18 Hb_000363_350 0.1713074865 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
19 Hb_073171_090 0.17287456 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
20 Hb_013358_020 0.1746257609 - - ccr4-associated factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003305_030 Hb_003305_030 Hb_002250_050 Hb_002250_050 Hb_003305_030--Hb_002250_050 Hb_041895_040 Hb_041895_040 Hb_003305_030--Hb_041895_040 Hb_000692_210 Hb_000692_210 Hb_003305_030--Hb_000692_210 Hb_000438_090 Hb_000438_090 Hb_003305_030--Hb_000438_090 Hb_171718_020 Hb_171718_020 Hb_003305_030--Hb_171718_020 Hb_164945_010 Hb_164945_010 Hb_003305_030--Hb_164945_010 Hb_001255_010 Hb_001255_010 Hb_002250_050--Hb_001255_010 Hb_017159_010 Hb_017159_010 Hb_002250_050--Hb_017159_010 Hb_000523_030 Hb_000523_030 Hb_002250_050--Hb_000523_030 Hb_004837_050 Hb_004837_050 Hb_002250_050--Hb_004837_050 Hb_009247_010 Hb_009247_010 Hb_002250_050--Hb_009247_010 Hb_005394_010 Hb_005394_010 Hb_041895_040--Hb_005394_010 Hb_015026_040 Hb_015026_040 Hb_041895_040--Hb_015026_040 Hb_001246_160 Hb_001246_160 Hb_041895_040--Hb_001246_160 Hb_000163_230 Hb_000163_230 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_000594_110 Hb_000594_110 Hb_041895_040--Hb_000594_110 Hb_002518_200 Hb_002518_200 Hb_000692_210--Hb_002518_200 Hb_004837_220 Hb_004837_220 Hb_000692_210--Hb_004837_220 Hb_003747_050 Hb_003747_050 Hb_000692_210--Hb_003747_050 Hb_000003_740 Hb_000003_740 Hb_000692_210--Hb_000003_740 Hb_005000_140 Hb_005000_140 Hb_000692_210--Hb_005000_140 Hb_080147_020 Hb_080147_020 Hb_000692_210--Hb_080147_020 Hb_000438_090--Hb_164945_010 Hb_010789_020 Hb_010789_020 Hb_000438_090--Hb_010789_020 Hb_089140_120 Hb_089140_120 Hb_000438_090--Hb_089140_120 Hb_007163_060 Hb_007163_060 Hb_000438_090--Hb_007163_060 Hb_000320_050 Hb_000320_050 Hb_000438_090--Hb_000320_050 Hb_000122_010 Hb_000122_010 Hb_000438_090--Hb_000122_010 Hb_000363_350 Hb_000363_350 Hb_171718_020--Hb_000363_350 Hb_001307_190 Hb_001307_190 Hb_171718_020--Hb_001307_190 Hb_000011_050 Hb_000011_050 Hb_171718_020--Hb_000011_050 Hb_014231_020 Hb_014231_020 Hb_171718_020--Hb_014231_020 Hb_000000_340 Hb_000000_340 Hb_171718_020--Hb_000000_340 Hb_000617_310 Hb_000617_310 Hb_171718_020--Hb_000617_310 Hb_000836_300 Hb_000836_300 Hb_164945_010--Hb_000836_300 Hb_000958_080 Hb_000958_080 Hb_164945_010--Hb_000958_080 Hb_000046_080 Hb_000046_080 Hb_164945_010--Hb_000046_080 Hb_164945_010--Hb_007163_060 Hb_005322_050 Hb_005322_050 Hb_164945_010--Hb_005322_050 Hb_083628_010 Hb_083628_010 Hb_164945_010--Hb_083628_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1526 55.6433 66.9846 66.328 12.2716 18.0743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2993 12.8764 4.41577 18.1558 2.7905

CAGE analysis