Hb_003312_010

Information

Type -
Description -
Location Contig3312: 17066-18163
Sequence    

Annotation

kegg
ID egr:104428797
description uncharacterized LOC104428797
nr
ID XP_010040034.1
description PREDICTED: uncharacterized protein LOC104428797 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID M1DSU3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043417 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003312_010 0.0 - - PREDICTED: uncharacterized protein LOC104428797 [Eucalyptus grandis]
2 Hb_012052_060 0.1649695151 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
3 Hb_000877_060 0.1969113063 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
4 Hb_003159_080 0.1973944351 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
5 Hb_005625_040 0.1986507211 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
6 Hb_000442_100 0.1997171848 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
7 Hb_112399_010 0.2036798345 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_030565_070 0.204076652 - - -
9 Hb_006189_010 0.2041364976 - - -
10 Hb_170305_020 0.2042342777 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
11 Hb_011472_040 0.2053023384 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
12 Hb_000107_370 0.2074368971 - - PREDICTED: uncharacterized protein At2g17340-like isoform X1 [Jatropha curcas]
13 Hb_006816_500 0.2076254501 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
14 Hb_015026_120 0.2084766056 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
15 Hb_055384_010 0.210864878 - - -
16 Hb_000500_280 0.2124051927 - - Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
17 Hb_134226_010 0.2131222998 - - 40S ribosomal protein S21e, putative [Ricinus communis]
18 Hb_001150_040 0.2133986659 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Solanum lycopersicum]
19 Hb_157854_010 0.2135147426 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
20 Hb_003777_270 0.2142490414 - - 60S ribosomal protein L3B [Hevea brasiliensis]

Gene co-expression network

sample Hb_003312_010 Hb_003312_010 Hb_012052_060 Hb_012052_060 Hb_003312_010--Hb_012052_060 Hb_000877_060 Hb_000877_060 Hb_003312_010--Hb_000877_060 Hb_003159_080 Hb_003159_080 Hb_003312_010--Hb_003159_080 Hb_005625_040 Hb_005625_040 Hb_003312_010--Hb_005625_040 Hb_000442_100 Hb_000442_100 Hb_003312_010--Hb_000442_100 Hb_112399_010 Hb_112399_010 Hb_003312_010--Hb_112399_010 Hb_012052_060--Hb_000877_060 Hb_004920_040 Hb_004920_040 Hb_012052_060--Hb_004920_040 Hb_003106_070 Hb_003106_070 Hb_012052_060--Hb_003106_070 Hb_004221_010 Hb_004221_010 Hb_012052_060--Hb_004221_010 Hb_006189_010 Hb_006189_010 Hb_012052_060--Hb_006189_010 Hb_084934_010 Hb_084934_010 Hb_012052_060--Hb_084934_010 Hb_000877_060--Hb_004221_010 Hb_012022_030 Hb_012022_030 Hb_000877_060--Hb_012022_030 Hb_001248_050 Hb_001248_050 Hb_000877_060--Hb_001248_050 Hb_011828_020 Hb_011828_020 Hb_000877_060--Hb_011828_020 Hb_000720_120 Hb_000720_120 Hb_000877_060--Hb_000720_120 Hb_002762_060 Hb_002762_060 Hb_000877_060--Hb_002762_060 Hb_004223_090 Hb_004223_090 Hb_003159_080--Hb_004223_090 Hb_005539_030 Hb_005539_030 Hb_003159_080--Hb_005539_030 Hb_015292_030 Hb_015292_030 Hb_003159_080--Hb_015292_030 Hb_000003_160 Hb_000003_160 Hb_003159_080--Hb_000003_160 Hb_039946_020 Hb_039946_020 Hb_003159_080--Hb_039946_020 Hb_000169_010 Hb_000169_010 Hb_003159_080--Hb_000169_010 Hb_000009_590 Hb_000009_590 Hb_005625_040--Hb_000009_590 Hb_006816_500 Hb_006816_500 Hb_005625_040--Hb_006816_500 Hb_000041_220 Hb_000041_220 Hb_005625_040--Hb_000041_220 Hb_001514_200 Hb_001514_200 Hb_005625_040--Hb_001514_200 Hb_004586_190 Hb_004586_190 Hb_005625_040--Hb_004586_190 Hb_006816_320 Hb_006816_320 Hb_005625_040--Hb_006816_320 Hb_004724_100 Hb_004724_100 Hb_000442_100--Hb_004724_100 Hb_003086_110 Hb_003086_110 Hb_000442_100--Hb_003086_110 Hb_001818_080 Hb_001818_080 Hb_000442_100--Hb_001818_080 Hb_034585_030 Hb_034585_030 Hb_000442_100--Hb_034585_030 Hb_015026_120 Hb_015026_120 Hb_000442_100--Hb_015026_120 Hb_000617_320 Hb_000617_320 Hb_000442_100--Hb_000617_320 Hb_005298_010 Hb_005298_010 Hb_112399_010--Hb_005298_010 Hb_055384_010 Hb_055384_010 Hb_112399_010--Hb_055384_010 Hb_000056_100 Hb_000056_100 Hb_112399_010--Hb_000056_100 Hb_001184_110 Hb_001184_110 Hb_112399_010--Hb_001184_110 Hb_000853_110 Hb_000853_110 Hb_112399_010--Hb_000853_110 Hb_005625_060 Hb_005625_060 Hb_112399_010--Hb_005625_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.366625 0.0974914 0.0619879 0 0.154768 0.367676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.356194 0.34998 0.123879 0.342844 0

CAGE analysis