Hb_003320_030

Information

Type -
Description -
Location Contig3320: 91978-92661
Sequence    

Annotation

kegg
ID rcu:RCOM_1447810
description hypothetical protein
nr
ID XP_002512933.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RH74
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1447810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34887: 91970-92313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003320_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002983_100 0.1508074095 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
3 Hb_001329_260 0.1586456166 - - PREDICTED: uncharacterized protein LOC105642694 isoform X1 [Jatropha curcas]
4 Hb_005116_020 0.1679563091 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
5 Hb_001159_210 0.1713944785 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
6 Hb_000038_150 0.1714526938 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
7 Hb_134732_010 0.1725771041 - - -
8 Hb_008147_030 0.1786531113 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
9 Hb_141838_010 0.1788942331 - - -
10 Hb_001268_230 0.1801931293 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_000317_080 0.1811509293 - - PREDICTED: probable galacturonosyltransferase 10 [Jatropha curcas]
12 Hb_000548_010 0.1817985371 - - -
13 Hb_001017_100 0.1962669879 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
14 Hb_004648_040 0.1979927947 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
15 Hb_000161_100 0.2004832388 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
16 Hb_031073_010 0.2009664205 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
17 Hb_011515_030 0.2015344326 - - -
18 Hb_002903_120 0.2060130776 - - -
19 Hb_000018_160 0.2064058899 - - nitrate transporter, putative [Ricinus communis]
20 Hb_000173_210 0.2097017837 - - PREDICTED: serine incorporator 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003320_030 Hb_003320_030 Hb_002983_100 Hb_002983_100 Hb_003320_030--Hb_002983_100 Hb_001329_260 Hb_001329_260 Hb_003320_030--Hb_001329_260 Hb_005116_020 Hb_005116_020 Hb_003320_030--Hb_005116_020 Hb_001159_210 Hb_001159_210 Hb_003320_030--Hb_001159_210 Hb_000038_150 Hb_000038_150 Hb_003320_030--Hb_000038_150 Hb_134732_010 Hb_134732_010 Hb_003320_030--Hb_134732_010 Hb_002983_100--Hb_005116_020 Hb_141838_010 Hb_141838_010 Hb_002983_100--Hb_141838_010 Hb_059126_010 Hb_059126_010 Hb_002983_100--Hb_059126_010 Hb_033225_020 Hb_033225_020 Hb_002983_100--Hb_033225_020 Hb_001125_030 Hb_001125_030 Hb_002983_100--Hb_001125_030 Hb_004650_080 Hb_004650_080 Hb_001329_260--Hb_004650_080 Hb_001196_050 Hb_001196_050 Hb_001329_260--Hb_001196_050 Hb_000857_050 Hb_000857_050 Hb_001329_260--Hb_000857_050 Hb_098315_110 Hb_098315_110 Hb_001329_260--Hb_098315_110 Hb_000331_610 Hb_000331_610 Hb_001329_260--Hb_000331_610 Hb_005116_020--Hb_134732_010 Hb_005116_020--Hb_001159_210 Hb_005116_020--Hb_000038_150 Hb_029866_010 Hb_029866_010 Hb_005116_020--Hb_029866_010 Hb_001159_210--Hb_000038_150 Hb_002326_060 Hb_002326_060 Hb_001159_210--Hb_002326_060 Hb_001159_210--Hb_134732_010 Hb_047661_010 Hb_047661_010 Hb_001159_210--Hb_047661_010 Hb_004460_020 Hb_004460_020 Hb_001159_210--Hb_004460_020 Hb_045502_010 Hb_045502_010 Hb_000038_150--Hb_045502_010 Hb_000038_150--Hb_134732_010 Hb_035360_010 Hb_035360_010 Hb_000038_150--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000038_150--Hb_000619_070 Hb_000038_150--Hb_004460_020 Hb_156144_020 Hb_156144_020 Hb_134732_010--Hb_156144_020 Hb_000200_060 Hb_000200_060 Hb_134732_010--Hb_000200_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.749 10.3104 7.17531 17.7236 455.34 138.969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.2416 6.70035 27.2375 6.31421 3.23854

CAGE analysis