Hb_003321_010

Information

Type -
Description -
Location Contig3321: 11687-14864
Sequence    

Annotation

kegg
ID rcu:RCOM_0884420
description hypothetical protein
nr
ID XP_002522613.1
description hypothetical protein RCOM_0884420 [Ricinus communis]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID K7LBZ9
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0005515
description phosphoprotein phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003321_010 0.0 - - hypothetical protein RCOM_0884420 [Ricinus communis]
2 Hb_001060_110 0.1540776252 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
3 Hb_001277_270 0.1613731644 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
4 Hb_000856_190 0.1664349899 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
5 Hb_004324_300 0.168120397 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
6 Hb_004204_170 0.1696980037 - - synaptosomal associated protein, putative [Ricinus communis]
7 Hb_000983_090 0.1697467515 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
8 Hb_005016_160 0.1700122057 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
9 Hb_001621_150 0.17018487 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Jatropha curcas]
10 Hb_000116_010 0.1715143607 - - isocitrate dehydrogenase, putative [Ricinus communis]
11 Hb_000818_010 0.1718522717 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
12 Hb_000398_010 0.1722710202 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003106_040 0.1755880151 - - lipase, putative [Ricinus communis]
14 Hb_000007_180 0.1763340624 - - hypothetical protein PRUPE_ppb024585mg, partial [Prunus persica]
15 Hb_004586_210 0.1790911652 - - transcription factor, putative [Ricinus communis]
16 Hb_012055_060 0.1899675135 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
17 Hb_000179_070 0.1911914554 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
18 Hb_029799_010 0.1913515782 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_000334_220 0.1914170118 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
20 Hb_003082_010 0.1930090062 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]

Gene co-expression network

sample Hb_003321_010 Hb_003321_010 Hb_001060_110 Hb_001060_110 Hb_003321_010--Hb_001060_110 Hb_001277_270 Hb_001277_270 Hb_003321_010--Hb_001277_270 Hb_000856_190 Hb_000856_190 Hb_003321_010--Hb_000856_190 Hb_004324_300 Hb_004324_300 Hb_003321_010--Hb_004324_300 Hb_004204_170 Hb_004204_170 Hb_003321_010--Hb_004204_170 Hb_000983_090 Hb_000983_090 Hb_003321_010--Hb_000983_090 Hb_001060_110--Hb_001277_270 Hb_012395_220 Hb_012395_220 Hb_001060_110--Hb_012395_220 Hb_002813_050 Hb_002813_050 Hb_001060_110--Hb_002813_050 Hb_001621_150 Hb_001621_150 Hb_001060_110--Hb_001621_150 Hb_000261_490 Hb_000261_490 Hb_001060_110--Hb_000261_490 Hb_000859_060 Hb_000859_060 Hb_001277_270--Hb_000859_060 Hb_126643_020 Hb_126643_020 Hb_001277_270--Hb_126643_020 Hb_001277_270--Hb_004204_170 Hb_001178_140 Hb_001178_140 Hb_001277_270--Hb_001178_140 Hb_000085_100 Hb_000085_100 Hb_001277_270--Hb_000085_100 Hb_002085_110 Hb_002085_110 Hb_001277_270--Hb_002085_110 Hb_000856_190--Hb_004204_170 Hb_000856_190--Hb_000983_090 Hb_000818_010 Hb_000818_010 Hb_000856_190--Hb_000818_010 Hb_000334_220 Hb_000334_220 Hb_000856_190--Hb_000334_220 Hb_000856_190--Hb_000085_100 Hb_012762_030 Hb_012762_030 Hb_000856_190--Hb_012762_030 Hb_000856_380 Hb_000856_380 Hb_004324_300--Hb_000856_380 Hb_003020_270 Hb_003020_270 Hb_004324_300--Hb_003020_270 Hb_007943_050 Hb_007943_050 Hb_004324_300--Hb_007943_050 Hb_002234_100 Hb_002234_100 Hb_004324_300--Hb_002234_100 Hb_000210_010 Hb_000210_010 Hb_004324_300--Hb_000210_010 Hb_000010_240 Hb_000010_240 Hb_004324_300--Hb_000010_240 Hb_004204_170--Hb_000983_090 Hb_004204_170--Hb_000085_100 Hb_001617_050 Hb_001617_050 Hb_004204_170--Hb_001617_050 Hb_004204_170--Hb_001178_140 Hb_002411_030 Hb_002411_030 Hb_000983_090--Hb_002411_030 Hb_000983_090--Hb_012762_030 Hb_012055_060 Hb_012055_060 Hb_000983_090--Hb_012055_060 Hb_000331_670 Hb_000331_670 Hb_000983_090--Hb_000331_670
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.11135 2.35121 1.10817 0.816115 1.24474 0.2844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03828 1.04862 2.53293 0.438595 0.214773

CAGE analysis