Hb_003322_010

Information

Type -
Description -
Location Contig3322: 2219-5366
Sequence    

Annotation

kegg
ID cit:102627129
description TMV resistance protein N-like
nr
ID XP_012086191.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A067JQ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003322_010 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_004931_010 0.2285619799 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
3 Hb_001221_560 0.2660008045 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase 1B-like [Jatropha curcas]
4 Hb_003020_080 0.269643383 - - -
5 Hb_000098_290 0.2715836353 - - -
6 Hb_000803_040 0.2771814965 - - -
7 Hb_001377_400 0.2777366628 - - neutral/alkaline invertase [Manihot esculenta]
8 Hb_148891_010 0.2812101596 - - -
9 Hb_011249_050 0.28451869 - - -
10 Hb_001504_050 0.2850733836 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
11 Hb_013399_010 0.2865520447 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
12 Hb_011689_130 0.2887585402 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
13 Hb_001221_570 0.2905112214 - - -
14 Hb_006210_020 0.2908009128 - - PREDICTED: calcium sensing receptor, chloroplastic [Jatropha curcas]
15 Hb_001799_110 0.2931675079 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X2 [Jatropha curcas]
16 Hb_002282_040 0.2935012424 - - hypothetical protein VITISV_030841 [Vitis vinifera]
17 Hb_000679_060 0.2945041535 - - ADP,ATP carrier protein, putative [Ricinus communis]
18 Hb_000321_160 0.2959176657 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
19 Hb_001096_090 0.2979445379 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
20 Hb_000866_240 0.2985410622 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003322_010 Hb_003322_010 Hb_004931_010 Hb_004931_010 Hb_003322_010--Hb_004931_010 Hb_001221_560 Hb_001221_560 Hb_003322_010--Hb_001221_560 Hb_003020_080 Hb_003020_080 Hb_003322_010--Hb_003020_080 Hb_000098_290 Hb_000098_290 Hb_003322_010--Hb_000098_290 Hb_000803_040 Hb_000803_040 Hb_003322_010--Hb_000803_040 Hb_001377_400 Hb_001377_400 Hb_003322_010--Hb_001377_400 Hb_001186_080 Hb_001186_080 Hb_004931_010--Hb_001186_080 Hb_001017_080 Hb_001017_080 Hb_004931_010--Hb_001017_080 Hb_000191_030 Hb_000191_030 Hb_004931_010--Hb_000191_030 Hb_153216_010 Hb_153216_010 Hb_004931_010--Hb_153216_010 Hb_001504_050 Hb_001504_050 Hb_004931_010--Hb_001504_050 Hb_001862_120 Hb_001862_120 Hb_001221_560--Hb_001862_120 Hb_000270_330 Hb_000270_330 Hb_001221_560--Hb_000270_330 Hb_006384_010 Hb_006384_010 Hb_001221_560--Hb_006384_010 Hb_012506_070 Hb_012506_070 Hb_001221_560--Hb_012506_070 Hb_000676_140 Hb_000676_140 Hb_001221_560--Hb_000676_140 Hb_116420_010 Hb_116420_010 Hb_001221_560--Hb_116420_010 Hb_096224_020 Hb_096224_020 Hb_003020_080--Hb_096224_020 Hb_002282_040 Hb_002282_040 Hb_003020_080--Hb_002282_040 Hb_003020_080--Hb_004931_010 Hb_004931_080 Hb_004931_080 Hb_003020_080--Hb_004931_080 Hb_011457_020 Hb_011457_020 Hb_003020_080--Hb_011457_020 Hb_057098_010 Hb_057098_010 Hb_000098_290--Hb_057098_010 Hb_037063_010 Hb_037063_010 Hb_000098_290--Hb_037063_010 Hb_011249_050 Hb_011249_050 Hb_000098_290--Hb_011249_050 Hb_005539_020 Hb_005539_020 Hb_000098_290--Hb_005539_020 Hb_002400_360 Hb_002400_360 Hb_000098_290--Hb_002400_360 Hb_010407_170 Hb_010407_170 Hb_000098_290--Hb_010407_170 Hb_032202_030 Hb_032202_030 Hb_000803_040--Hb_032202_030 Hb_000749_080 Hb_000749_080 Hb_000803_040--Hb_000749_080 Hb_148891_010 Hb_148891_010 Hb_000803_040--Hb_148891_010 Hb_000529_240 Hb_000529_240 Hb_000803_040--Hb_000529_240 Hb_000445_190 Hb_000445_190 Hb_000803_040--Hb_000445_190 Hb_127008_010 Hb_127008_010 Hb_001377_400--Hb_127008_010 Hb_002157_130 Hb_002157_130 Hb_001377_400--Hb_002157_130 Hb_000144_080 Hb_000144_080 Hb_001377_400--Hb_000144_080 Hb_013399_010 Hb_013399_010 Hb_001377_400--Hb_013399_010 Hb_001377_400--Hb_001504_050 Hb_001301_240 Hb_001301_240 Hb_001377_400--Hb_001301_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.263002 0.64407 1.7814 0.149264 0.580936 0.0240335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76825 1.84968 0 0.728881 0.242657

CAGE analysis