Hb_003327_030

Information

Type -
Description -
Location Contig3327: 9702-16861
Sequence    

Annotation

kegg
ID rcu:RCOM_0569180
description Hsc70-interacting protein, putative
nr
ID XP_002530786.1
description Hsc70-interacting protein, putative [Ricinus communis]
swissprot
ID Q8VWG7
description TPR repeat-containing thioredoxin TDX OS=Arabidopsis thaliana GN=TDX PE=1 SV=1
trembl
ID B9SXR7
description Hsc70-interacting protein, putative OS=Ricinus communis GN=RCOM_0569180 PE=4 SV=1
Gene Ontology
ID GO:0009987
description tpr repeat-containing thioredoxin tdx

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34896: 11813-16866 , PASA_asmbl_34897: 13598-14049
cDNA
(Sanger)
(ID:Location)		 008_E03.ab1: 11858-14941

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003327_030 0.0 - - Hsc70-interacting protein, putative [Ricinus communis]
2 Hb_097433_010 0.0844108453 - - PREDICTED: TPR repeat-containing thioredoxin TDX [Jatropha curcas]
3 Hb_035947_010 0.1034460404 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
4 Hb_002814_120 0.1297074124 - - PREDICTED: uncharacterized protein LOC105633463 [Jatropha curcas]
5 Hb_000406_040 0.150188133 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
6 Hb_004635_130 0.1568618 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
7 Hb_002918_310 0.1583415225 - - PREDICTED: dnaJ protein homolog 1-like [Jatropha curcas]
8 Hb_004512_020 0.1587177523 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
9 Hb_000755_080 0.1607502251 - - hypothetical protein RCOM_1016710 [Ricinus communis]
10 Hb_001083_030 0.1609118735 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
11 Hb_012132_030 0.1645677804 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
12 Hb_002311_250 0.1681205806 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
13 Hb_001946_360 0.1703524246 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
14 Hb_003751_060 0.1727392521 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
15 Hb_048476_170 0.1735033861 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
16 Hb_009558_040 0.1761297601 transcription factor TF Family: MYB hypothetical protein PHAVU_008G102000g [Phaseolus vulgaris]
17 Hb_000365_140 0.1773258152 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
18 Hb_000946_120 0.1788915516 - - DNA binding protein, putative [Ricinus communis]
19 Hb_001136_090 0.1814048066 - - Protein PNS1, putative [Ricinus communis]
20 Hb_002965_030 0.1835135407 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]

Gene co-expression network

sample Hb_003327_030 Hb_003327_030 Hb_097433_010 Hb_097433_010 Hb_003327_030--Hb_097433_010 Hb_035947_010 Hb_035947_010 Hb_003327_030--Hb_035947_010 Hb_002814_120 Hb_002814_120 Hb_003327_030--Hb_002814_120 Hb_000406_040 Hb_000406_040 Hb_003327_030--Hb_000406_040 Hb_004635_130 Hb_004635_130 Hb_003327_030--Hb_004635_130 Hb_002918_310 Hb_002918_310 Hb_003327_030--Hb_002918_310 Hb_097433_010--Hb_035947_010 Hb_085375_010 Hb_085375_010 Hb_097433_010--Hb_085375_010 Hb_097433_010--Hb_002918_310 Hb_097433_010--Hb_004635_130 Hb_097433_010--Hb_002814_120 Hb_003751_060 Hb_003751_060 Hb_035947_010--Hb_003751_060 Hb_035947_010--Hb_002918_310 Hb_001083_030 Hb_001083_030 Hb_035947_010--Hb_001083_030 Hb_002387_020 Hb_002387_020 Hb_035947_010--Hb_002387_020 Hb_001009_290 Hb_001009_290 Hb_002814_120--Hb_001009_290 Hb_000755_080 Hb_000755_080 Hb_002814_120--Hb_000755_080 Hb_011512_060 Hb_011512_060 Hb_002814_120--Hb_011512_060 Hb_012132_030 Hb_012132_030 Hb_002814_120--Hb_012132_030 Hb_006452_090 Hb_006452_090 Hb_002814_120--Hb_006452_090 Hb_000406_040--Hb_001083_030 Hb_000406_040--Hb_012132_030 Hb_165350_010 Hb_165350_010 Hb_000406_040--Hb_165350_010 Hb_000487_100 Hb_000487_100 Hb_000406_040--Hb_000487_100 Hb_017168_010 Hb_017168_010 Hb_000406_040--Hb_017168_010 Hb_003097_190 Hb_003097_190 Hb_000406_040--Hb_003097_190 Hb_004635_130--Hb_000755_080 Hb_001051_090 Hb_001051_090 Hb_004635_130--Hb_001051_090 Hb_000787_090 Hb_000787_090 Hb_004635_130--Hb_000787_090 Hb_002896_060 Hb_002896_060 Hb_004635_130--Hb_002896_060 Hb_004635_130--Hb_002814_120 Hb_000720_070 Hb_000720_070 Hb_002918_310--Hb_000720_070 Hb_001534_070 Hb_001534_070 Hb_002918_310--Hb_001534_070 Hb_012340_020 Hb_012340_020 Hb_002918_310--Hb_012340_020 Hb_002965_030 Hb_002965_030 Hb_002918_310--Hb_002965_030 Hb_000152_560 Hb_000152_560 Hb_002918_310--Hb_000152_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.7167 12.3845 8.84216 5.71131 62.8245 9.55012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94752 6.3934 14.3691 8.0536 8.08113

CAGE analysis