Hb_003327_040

Information

Type -
Description -
Location Contig3327: 20348-23126
Sequence    

Annotation

kegg
ID rcu:RCOM_0569190
description ATP-binding cassette transporter, putative (EC:3.6.3.30)
nr
ID XP_012064642.1
description PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
swissprot
ID Q9M2V6
description ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1
trembl
ID B9SXR8
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0569190 PE=3 SV=1
Gene Ontology
ID GO:0016787
description abc transporter g family member 17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003327_040 0.0 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
2 Hb_007441_050 0.2734413868 - - unknown [Medicago truncatula]
3 Hb_159921_010 0.288342248 - - -
4 Hb_122408_010 0.3004097453 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_040747_010 0.3085158704 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
6 Hb_008749_060 0.3099355252 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
7 Hb_149714_010 0.3110298628 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
8 Hb_000479_290 0.3130927096 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X2 [Jatropha curcas]
9 Hb_049160_010 0.3143837603 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_056506_020 0.3184404668 - - PREDICTED: uncharacterized protein LOC105647588 [Jatropha curcas]
11 Hb_028341_010 0.3194722966 - - hypothetical protein CICLE_v10026841mg [Citrus clementina]
12 Hb_118720_010 0.3203173498 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
13 Hb_025214_090 0.3216383076 - - clathrin assembly protein, putative [Ricinus communis]
14 Hb_012506_010 0.3224235294 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
15 Hb_008225_070 0.3226069286 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_000152_220 0.3237344919 - - acc synthase, putative [Ricinus communis]
17 Hb_000849_050 0.3237991846 - - hypothetical protein VITISV_010852 [Vitis vinifera]
18 Hb_116638_010 0.3272731505 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006698_050 0.3272930169 - - Beta-glucosidase, putative [Ricinus communis]
20 Hb_001396_110 0.3295466292 - - DNA primase large subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_003327_040 Hb_003327_040 Hb_007441_050 Hb_007441_050 Hb_003327_040--Hb_007441_050 Hb_159921_010 Hb_159921_010 Hb_003327_040--Hb_159921_010 Hb_122408_010 Hb_122408_010 Hb_003327_040--Hb_122408_010 Hb_040747_010 Hb_040747_010 Hb_003327_040--Hb_040747_010 Hb_008749_060 Hb_008749_060 Hb_003327_040--Hb_008749_060 Hb_149714_010 Hb_149714_010 Hb_003327_040--Hb_149714_010 Hb_000317_130 Hb_000317_130 Hb_007441_050--Hb_000317_130 Hb_003633_040 Hb_003633_040 Hb_007441_050--Hb_003633_040 Hb_019053_010 Hb_019053_010 Hb_007441_050--Hb_019053_010 Hb_000152_220 Hb_000152_220 Hb_007441_050--Hb_000152_220 Hb_051424_010 Hb_051424_010 Hb_007441_050--Hb_051424_010 Hb_000082_020 Hb_000082_020 Hb_007441_050--Hb_000082_020 Hb_000853_400 Hb_000853_400 Hb_159921_010--Hb_000853_400 Hb_001008_040 Hb_001008_040 Hb_159921_010--Hb_001008_040 Hb_000432_060 Hb_000432_060 Hb_159921_010--Hb_000432_060 Hb_159921_010--Hb_122408_010 Hb_002666_020 Hb_002666_020 Hb_159921_010--Hb_002666_020 Hb_004204_170 Hb_004204_170 Hb_122408_010--Hb_004204_170 Hb_003050_390 Hb_003050_390 Hb_122408_010--Hb_003050_390 Hb_181810_020 Hb_181810_020 Hb_122408_010--Hb_181810_020 Hb_092408_010 Hb_092408_010 Hb_122408_010--Hb_092408_010 Hb_001178_140 Hb_001178_140 Hb_122408_010--Hb_001178_140 Hb_000680_050 Hb_000680_050 Hb_122408_010--Hb_000680_050 Hb_106688_010 Hb_106688_010 Hb_040747_010--Hb_106688_010 Hb_013358_100 Hb_013358_100 Hb_040747_010--Hb_013358_100 Hb_000179_180 Hb_000179_180 Hb_040747_010--Hb_000179_180 Hb_000116_150 Hb_000116_150 Hb_040747_010--Hb_000116_150 Hb_077573_010 Hb_077573_010 Hb_040747_010--Hb_077573_010 Hb_145317_010 Hb_145317_010 Hb_040747_010--Hb_145317_010 Hb_034506_010 Hb_034506_010 Hb_008749_060--Hb_034506_010 Hb_001377_070 Hb_001377_070 Hb_008749_060--Hb_001377_070 Hb_172141_010 Hb_172141_010 Hb_008749_060--Hb_172141_010 Hb_000574_100 Hb_000574_100 Hb_008749_060--Hb_000574_100 Hb_093432_010 Hb_093432_010 Hb_008749_060--Hb_093432_010 Hb_001135_130 Hb_001135_130 Hb_008749_060--Hb_001135_130 Hb_000086_340 Hb_000086_340 Hb_149714_010--Hb_000086_340 Hb_000475_040 Hb_000475_040 Hb_149714_010--Hb_000475_040 Hb_000122_050 Hb_000122_050 Hb_149714_010--Hb_000122_050 Hb_000302_260 Hb_000302_260 Hb_149714_010--Hb_000302_260 Hb_030116_010 Hb_030116_010 Hb_149714_010--Hb_030116_010 Hb_000264_290 Hb_000264_290 Hb_149714_010--Hb_000264_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0196856 0.0623833 0.0408567 0.0320028 0 0.0845801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0314208 0.0298756 0.0187323 0

CAGE analysis