Hb_003327_050

Information

Type -
Description -
Location Contig3327: 32545-41476
Sequence    

Annotation

kegg
ID rcu:RCOM_0569510
description surfeit locus protein, putative
nr
ID XP_002530789.1
description surfeit locus protein, putative [Ricinus communis]
swissprot
ID Q9SE51
description Surfeit locus protein 1 OS=Arabidopsis thaliana GN=SURF1 PE=2 SV=1
trembl
ID B9SXS0
description Surfeit locus protein, putative OS=Ricinus communis GN=RCOM_0569510 PE=4 SV=1
Gene Ontology
ID GO:0016020
description surfeit locus 1 cytochrome c oxidase biogenesis protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003327_050 0.0 - - surfeit locus protein, putative [Ricinus communis]
2 Hb_086639_090 0.127100851 - - 60S ribosomal protein L7a, putative [Ricinus communis]
3 Hb_000441_110 0.1279405235 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
4 Hb_000028_100 0.1293731779 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
5 Hb_001369_170 0.1378362674 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
6 Hb_031718_010 0.1398094781 - - -
7 Hb_004453_020 0.1420442278 - - unnamed protein product [Vitis vinifera]
8 Hb_004907_060 0.1420667147 - - PREDICTED: tropinone reductase homolog At5g06060-like [Jatropha curcas]
9 Hb_004543_040 0.1427598077 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_006478_150 0.1430033433 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
11 Hb_007017_010 0.1451163873 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
12 Hb_000788_010 0.1473268063 - - 40S ribosomal protein S16A [Hevea brasiliensis]
13 Hb_004567_120 0.1487272547 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
14 Hb_000175_320 0.1513029892 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
15 Hb_002232_060 0.1527749489 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
16 Hb_000136_170 0.1540886504 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
17 Hb_002235_080 0.1541367392 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
18 Hb_023711_010 0.154938638 - - -
19 Hb_000061_130 0.1556413186 - - rotamase, putative [Ricinus communis]
20 Hb_033642_080 0.1556582212 - - V-type proton ATPase subunit E [Hevea brasiliensis]

Gene co-expression network

sample Hb_003327_050 Hb_003327_050 Hb_086639_090 Hb_086639_090 Hb_003327_050--Hb_086639_090 Hb_000441_110 Hb_000441_110 Hb_003327_050--Hb_000441_110 Hb_000028_100 Hb_000028_100 Hb_003327_050--Hb_000028_100 Hb_001369_170 Hb_001369_170 Hb_003327_050--Hb_001369_170 Hb_031718_010 Hb_031718_010 Hb_003327_050--Hb_031718_010 Hb_004453_020 Hb_004453_020 Hb_003327_050--Hb_004453_020 Hb_000134_070 Hb_000134_070 Hb_086639_090--Hb_000134_070 Hb_000676_160 Hb_000676_160 Hb_086639_090--Hb_000676_160 Hb_000136_170 Hb_000136_170 Hb_086639_090--Hb_000136_170 Hb_004543_040 Hb_004543_040 Hb_086639_090--Hb_004543_040 Hb_006541_010 Hb_006541_010 Hb_086639_090--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_086639_090--Hb_004567_120 Hb_003540_240 Hb_003540_240 Hb_000441_110--Hb_003540_240 Hb_011671_100 Hb_011671_100 Hb_000441_110--Hb_011671_100 Hb_006478_150 Hb_006478_150 Hb_000441_110--Hb_006478_150 Hb_002056_050 Hb_002056_050 Hb_000441_110--Hb_002056_050 Hb_000441_110--Hb_004567_120 Hb_000441_110--Hb_004453_020 Hb_003929_150 Hb_003929_150 Hb_000028_100--Hb_003929_150 Hb_000155_160 Hb_000155_160 Hb_000028_100--Hb_000155_160 Hb_002235_080 Hb_002235_080 Hb_000028_100--Hb_002235_080 Hb_003494_050 Hb_003494_050 Hb_000028_100--Hb_003494_050 Hb_000419_020 Hb_000419_020 Hb_000028_100--Hb_000419_020 Hb_000028_100--Hb_000441_110 Hb_001085_270 Hb_001085_270 Hb_001369_170--Hb_001085_270 Hb_000788_010 Hb_000788_010 Hb_001369_170--Hb_000788_010 Hb_000302_280 Hb_000302_280 Hb_001369_170--Hb_000302_280 Hb_000567_410 Hb_000567_410 Hb_001369_170--Hb_000567_410 Hb_001369_170--Hb_004543_040 Hb_001369_170--Hb_006478_150 Hb_011644_030 Hb_011644_030 Hb_031718_010--Hb_011644_030 Hb_031718_010--Hb_004567_120 Hb_003623_050 Hb_003623_050 Hb_031718_010--Hb_003623_050 Hb_001484_010 Hb_001484_010 Hb_031718_010--Hb_001484_010 Hb_026048_070 Hb_026048_070 Hb_031718_010--Hb_026048_070 Hb_004102_110 Hb_004102_110 Hb_004453_020--Hb_004102_110 Hb_002518_080 Hb_002518_080 Hb_004453_020--Hb_002518_080 Hb_000667_070 Hb_000667_070 Hb_004453_020--Hb_000667_070 Hb_004453_020--Hb_011671_100 Hb_026527_050 Hb_026527_050 Hb_004453_020--Hb_026527_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.625068 1.02592 0.747165 0.771144 0.274446 1.67045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.59454 5.47627 1.54198 1.87736 1.51509

CAGE analysis