Hb_003335_070

Information

Type -
Description -
Location Contig3335: 140256-146145
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003335_070 0.0 - - -
2 Hb_000699_120 0.2428665193 - - DNA-binding family protein [Populus trichocarpa]
3 Hb_105712_010 0.2460860379 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
4 Hb_000603_240 0.2706962379 - - -
5 Hb_000002_390 0.2772227763 - - DNA binding protein, putative [Ricinus communis]
6 Hb_010589_110 0.279234249 - - PREDICTED: pumilio homolog 12-like [Jatropha curcas]
7 Hb_005321_030 0.2795833697 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4 [Jatropha curcas]
8 Hb_004705_030 0.2866405691 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007336_040 0.2938799424 - - protein binding protein, putative [Ricinus communis]
10 Hb_004584_010 0.294091362 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_006018_030 0.3009850696 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
12 Hb_113951_010 0.3089742956 - - hypothetical protein JCGZ_06358 [Jatropha curcas]
13 Hb_005214_130 0.3105733001 - - -
14 Hb_000260_450 0.3129464002 - - GTP binding protein, putative [Ricinus communis]
15 Hb_000077_410 0.3168897531 - - protein with unknown function [Ricinus communis]
16 Hb_026428_010 0.3178728913 - - copper transport protein ATOX1 [Hevea brasiliensis]
17 Hb_030370_030 0.317878885 - - putative wall-associated kinase family protein [Populus trichocarpa]
18 Hb_005396_040 0.3224842395 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_001001_030 0.32518201 - - hypothetical protein POPTR_0014s03230g [Populus trichocarpa]
20 Hb_001671_060 0.32622459 - - fad NAD binding oxidoreductases, putative [Ricinus communis]

Gene co-expression network

sample Hb_003335_070 Hb_003335_070 Hb_000699_120 Hb_000699_120 Hb_003335_070--Hb_000699_120 Hb_105712_010 Hb_105712_010 Hb_003335_070--Hb_105712_010 Hb_000603_240 Hb_000603_240 Hb_003335_070--Hb_000603_240 Hb_000002_390 Hb_000002_390 Hb_003335_070--Hb_000002_390 Hb_010589_110 Hb_010589_110 Hb_003335_070--Hb_010589_110 Hb_005321_030 Hb_005321_030 Hb_003335_070--Hb_005321_030 Hb_000178_110 Hb_000178_110 Hb_000699_120--Hb_000178_110 Hb_000077_410 Hb_000077_410 Hb_000699_120--Hb_000077_410 Hb_113951_010 Hb_113951_010 Hb_000699_120--Hb_113951_010 Hb_012725_110 Hb_012725_110 Hb_000699_120--Hb_012725_110 Hb_004705_030 Hb_004705_030 Hb_000699_120--Hb_004705_030 Hb_000836_500 Hb_000836_500 Hb_000699_120--Hb_000836_500 Hb_002943_030 Hb_002943_030 Hb_105712_010--Hb_002943_030 Hb_150751_010 Hb_150751_010 Hb_105712_010--Hb_150751_010 Hb_005128_040 Hb_005128_040 Hb_105712_010--Hb_005128_040 Hb_105712_010--Hb_004705_030 Hb_005214_130 Hb_005214_130 Hb_105712_010--Hb_005214_130 Hb_000284_160 Hb_000284_160 Hb_000603_240--Hb_000284_160 Hb_027751_040 Hb_027751_040 Hb_000603_240--Hb_027751_040 Hb_027751_030 Hb_027751_030 Hb_000603_240--Hb_027751_030 Hb_026766_010 Hb_026766_010 Hb_000603_240--Hb_026766_010 Hb_002843_190 Hb_002843_190 Hb_000603_240--Hb_002843_190 Hb_000548_040 Hb_000548_040 Hb_000002_390--Hb_000548_040 Hb_010872_060 Hb_010872_060 Hb_000002_390--Hb_010872_060 Hb_001425_120 Hb_001425_120 Hb_000002_390--Hb_001425_120 Hb_012347_010 Hb_012347_010 Hb_000002_390--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_000002_390--Hb_000957_040 Hb_001631_070 Hb_001631_070 Hb_000002_390--Hb_001631_070 Hb_030370_030 Hb_030370_030 Hb_010589_110--Hb_030370_030 Hb_000029_270 Hb_000029_270 Hb_010589_110--Hb_000029_270 Hb_010589_110--Hb_000077_410 Hb_010589_110--Hb_000699_120 Hb_002260_090 Hb_002260_090 Hb_010589_110--Hb_002260_090 Hb_001892_120 Hb_001892_120 Hb_010589_110--Hb_001892_120 Hb_000260_450 Hb_000260_450 Hb_005321_030--Hb_000260_450 Hb_001341_130 Hb_001341_130 Hb_005321_030--Hb_001341_130 Hb_055259_010 Hb_055259_010 Hb_005321_030--Hb_055259_010 Hb_010710_020 Hb_010710_020 Hb_005321_030--Hb_010710_020 Hb_026428_010 Hb_026428_010 Hb_005321_030--Hb_026428_010 Hb_000188_130 Hb_000188_130 Hb_005321_030--Hb_000188_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51974 0 0 0 0 0.0468561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09948 0.479928 0.493399 0.357319 0

CAGE analysis