Hb_003336_020

Information

Type -
Description -
Location Contig3336: 23628-26604
Sequence    

Annotation

kegg
ID vvi:100256899
description probable sodium/metabolite cotransporter BASS3, chloroplastic
nr
ID XP_002263684.2
description PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
swissprot
ID Q8RXE8
description Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1
trembl
ID D7TYL1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00620 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable sodium metabolite cotransporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34996: 22866-24344 , PASA_asmbl_34997: 26333-26524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003336_020 0.0 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
2 Hb_012940_020 0.0928700775 - - zeaxanthin epoxidase, putative [Ricinus communis]
3 Hb_028960_010 0.1178667 - - phosphoglycerate kinase, putative [Ricinus communis]
4 Hb_000699_080 0.1265565265 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
5 Hb_000359_070 0.1292868081 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
6 Hb_002686_060 0.1403898184 - - conserved hypothetical protein [Ricinus communis]
7 Hb_156850_020 0.1473431793 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
8 Hb_079526_010 0.1515520014 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Populus euphratica]
9 Hb_073490_010 0.157008121 - - NAD(P)-linked oxidoreductase superfamily protein isoform 1 [Theobroma cacao]
10 Hb_068804_110 0.1585928827 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
11 Hb_159305_010 0.1604416406 - - rpl2 [Jatropha curcas]
12 Hb_189099_020 0.1614283832 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
13 Hb_088080_030 0.1645515547 - - ribosomal protein S4 [Hevea brasiliensis]
14 Hb_106552_030 0.1650275395 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
15 Hb_000329_520 0.1663012535 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
16 Hb_006925_030 0.1666124999 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
17 Hb_006816_040 0.1669283976 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
18 Hb_010589_030 0.1736020935 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
19 Hb_011900_020 0.1754040453 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
20 Hb_000360_010 0.1770599881 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003336_020 Hb_003336_020 Hb_012940_020 Hb_012940_020 Hb_003336_020--Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_003336_020--Hb_028960_010 Hb_000699_080 Hb_000699_080 Hb_003336_020--Hb_000699_080 Hb_000359_070 Hb_000359_070 Hb_003336_020--Hb_000359_070 Hb_002686_060 Hb_002686_060 Hb_003336_020--Hb_002686_060 Hb_156850_020 Hb_156850_020 Hb_003336_020--Hb_156850_020 Hb_012940_020--Hb_028960_010 Hb_012940_020--Hb_156850_020 Hb_068804_110 Hb_068804_110 Hb_012940_020--Hb_068804_110 Hb_106552_030 Hb_106552_030 Hb_012940_020--Hb_106552_030 Hb_012940_020--Hb_000359_070 Hb_028960_010--Hb_156850_020 Hb_028960_010--Hb_068804_110 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_028960_010--Hb_000359_070 Hb_028960_010--Hb_106552_030 Hb_000699_080--Hb_002686_060 Hb_006925_030 Hb_006925_030 Hb_000699_080--Hb_006925_030 Hb_000038_020 Hb_000038_020 Hb_000699_080--Hb_000038_020 Hb_000120_900 Hb_000120_900 Hb_000699_080--Hb_000120_900 Hb_168031_020 Hb_168031_020 Hb_000699_080--Hb_168031_020 Hb_011900_020 Hb_011900_020 Hb_000359_070--Hb_011900_020 Hb_000359_070--Hb_156850_020 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_000359_070--Hb_000038_020 Hb_002686_060--Hb_000038_020 Hb_000012_010 Hb_000012_010 Hb_002686_060--Hb_000012_010 Hb_002686_060--Hb_000359_070 Hb_002686_060--Hb_168031_020 Hb_156850_020--Hb_106552_030 Hb_010080_070 Hb_010080_070 Hb_156850_020--Hb_010080_070 Hb_156850_020--Hb_011900_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0806043 0.175947 2.01599 1.87342 0.192178 0.150276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.560782 0.744452 0.619111 0.551092 18.7213

CAGE analysis