Hb_003337_050

Information

Type -
Description -
Location Contig3337: 76757-80145
Sequence    

Annotation

kegg
ID vvi:100254308
description probable protein phosphatase 2C 63
nr
ID XP_012079358.1
description PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
swissprot
ID O81760
description Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=2 SV=1
trembl
ID A0A067KJM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12500 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable protein phosphatase 2c 63

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35016: 76825-80162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003337_050 0.0 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
2 Hb_033045_010 0.1167831292 - - copine, putative [Ricinus communis]
3 Hb_002518_270 0.1272142572 - - glycogen phosphorylase, putative [Ricinus communis]
4 Hb_009803_030 0.1273207247 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
5 Hb_006970_150 0.134947184 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
6 Hb_001946_060 0.138283258 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
7 Hb_000265_020 0.1477678167 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
8 Hb_008948_080 0.1484025384 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
9 Hb_001538_050 0.1508446174 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
10 Hb_029576_100 0.1520858383 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
11 Hb_007420_010 0.1523451493 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
12 Hb_031862_020 0.1528358822 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_000412_090 0.1534404212 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_000280_110 0.1538239682 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_000668_160 0.1558637725 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
16 Hb_000501_040 0.158129505 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000819_010 0.1583404491 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
18 Hb_000037_010 0.1615293087 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
19 Hb_063523_010 0.161814619 - - -
20 Hb_007919_030 0.1622924367 - - -

Gene co-expression network

sample Hb_003337_050 Hb_003337_050 Hb_033045_010 Hb_033045_010 Hb_003337_050--Hb_033045_010 Hb_002518_270 Hb_002518_270 Hb_003337_050--Hb_002518_270 Hb_009803_030 Hb_009803_030 Hb_003337_050--Hb_009803_030 Hb_006970_150 Hb_006970_150 Hb_003337_050--Hb_006970_150 Hb_001946_060 Hb_001946_060 Hb_003337_050--Hb_001946_060 Hb_000265_020 Hb_000265_020 Hb_003337_050--Hb_000265_020 Hb_033045_010--Hb_000265_020 Hb_033045_010--Hb_006970_150 Hb_063523_010 Hb_063523_010 Hb_033045_010--Hb_063523_010 Hb_000489_020 Hb_000489_020 Hb_033045_010--Hb_000489_020 Hb_031862_020 Hb_031862_020 Hb_033045_010--Hb_031862_020 Hb_002518_270--Hb_006970_150 Hb_006501_170 Hb_006501_170 Hb_002518_270--Hb_006501_170 Hb_002518_270--Hb_033045_010 Hb_008948_080 Hb_008948_080 Hb_002518_270--Hb_008948_080 Hb_002518_270--Hb_001946_060 Hb_007420_010 Hb_007420_010 Hb_009803_030--Hb_007420_010 Hb_167272_010 Hb_167272_010 Hb_009803_030--Hb_167272_010 Hb_000819_010 Hb_000819_010 Hb_009803_030--Hb_000819_010 Hb_001515_030 Hb_001515_030 Hb_009803_030--Hb_001515_030 Hb_000280_110 Hb_000280_110 Hb_009803_030--Hb_000280_110 Hb_046101_010 Hb_046101_010 Hb_009803_030--Hb_046101_010 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_006970_150--Hb_000265_020 Hb_006970_150--Hb_008948_080 Hb_000163_250 Hb_000163_250 Hb_001946_060--Hb_000163_250 Hb_001085_230 Hb_001085_230 Hb_001946_060--Hb_001085_230 Hb_007919_030 Hb_007919_030 Hb_001946_060--Hb_007919_030 Hb_000037_010 Hb_000037_010 Hb_001946_060--Hb_000037_010 Hb_000808_220 Hb_000808_220 Hb_001946_060--Hb_000808_220 Hb_000265_020--Hb_000489_020 Hb_002085_070 Hb_002085_070 Hb_000265_020--Hb_002085_070 Hb_000521_290 Hb_000521_290 Hb_000265_020--Hb_000521_290 Hb_012018_020 Hb_012018_020 Hb_000265_020--Hb_012018_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.102819 8.30054 3.25179 1.10257 0.0257869 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0302988 0.0238372 0.268979 4.45138 2.64591

CAGE analysis