Hb_003349_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3349: 19446-23153
Sequence    

Annotation

kegg
ID cic:CICLE_v10023911mg
description hypothetical protein
nr
ID XP_006442836.1
description hypothetical protein CICLE_v10023911mg [Citrus clementina]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID V4U1N5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023911mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description nb-arc domain-containing disease resistance-like protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35071: 19809-19985 , PASA_asmbl_35072: 20136-20426 , PASA_asmbl_35073: 20769-21041 , PASA_asmbl_35074: 21984-22176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003349_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
2 Hb_002849_080 0.0992387689 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
3 Hb_001999_250 0.1023466001 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
4 Hb_009028_030 0.1023722932 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
5 Hb_010584_010 0.1113981155 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
6 Hb_001247_230 0.1151168829 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_007257_050 0.1167624286 - - protein with unknown function [Ricinus communis]
8 Hb_002609_010 0.1177353662 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
9 Hb_000265_250 0.1209631652 - - auxilin, putative [Ricinus communis]
10 Hb_005038_020 0.1270974169 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_018133_030 0.1279336183 - - Heme-binding protein, putative [Ricinus communis]
12 Hb_148209_020 0.1336363677 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
13 Hb_011465_030 0.1338671355 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_057451_010 0.1372654315 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
15 Hb_006316_070 0.1374275284 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
16 Hb_001396_260 0.1374501174 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
17 Hb_002316_050 0.1424255346 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001504_190 0.1432320554 - - double-stranded RNA binding protein, putative [Ricinus communis]
19 Hb_144824_010 0.1436982943 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
20 Hb_004449_050 0.1445504557 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003349_010 Hb_003349_010 Hb_002849_080 Hb_002849_080 Hb_003349_010--Hb_002849_080 Hb_001999_250 Hb_001999_250 Hb_003349_010--Hb_001999_250 Hb_009028_030 Hb_009028_030 Hb_003349_010--Hb_009028_030 Hb_010584_010 Hb_010584_010 Hb_003349_010--Hb_010584_010 Hb_001247_230 Hb_001247_230 Hb_003349_010--Hb_001247_230 Hb_007257_050 Hb_007257_050 Hb_003349_010--Hb_007257_050 Hb_148209_020 Hb_148209_020 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_001999_250--Hb_001247_230 Hb_000265_250 Hb_000265_250 Hb_001999_250--Hb_000265_250 Hb_001504_190 Hb_001504_190 Hb_001999_250--Hb_001504_190 Hb_075449_020 Hb_075449_020 Hb_001999_250--Hb_075449_020 Hb_001999_250--Hb_002849_080 Hb_057451_010 Hb_057451_010 Hb_009028_030--Hb_057451_010 Hb_003710_040 Hb_003710_040 Hb_009028_030--Hb_003710_040 Hb_009028_030--Hb_000265_250 Hb_003157_010 Hb_003157_010 Hb_009028_030--Hb_003157_010 Hb_004899_070 Hb_004899_070 Hb_009028_030--Hb_004899_070 Hb_009028_030--Hb_011465_030 Hb_010584_010--Hb_057451_010 Hb_010584_010--Hb_009028_030 Hb_010584_010--Hb_003710_040 Hb_010584_010--Hb_007257_050 Hb_010584_010--Hb_002609_010 Hb_000640_200 Hb_000640_200 Hb_010584_010--Hb_000640_200 Hb_001247_230--Hb_002849_080 Hb_001247_230--Hb_148209_020 Hb_001247_230--Hb_000265_250 Hb_001247_230--Hb_002609_010 Hb_000116_570 Hb_000116_570 Hb_001247_230--Hb_000116_570 Hb_031089_030 Hb_031089_030 Hb_007257_050--Hb_031089_030 Hb_007257_050--Hb_009028_030 Hb_007257_050--Hb_000265_250 Hb_007257_050--Hb_003157_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.43382 11.3954 0.871401 1.71653 9.84266 5.66382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.88905 1.50484 1.54016 2.31976 0.624853

CAGE analysis