Hb_003349_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3349: 25500-28511
Sequence    

Annotation

kegg
ID bvg:104889679
description disease resistance protein At4g27190-like
nr
ID XP_010673256.1
description PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID V4TWF8
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018699mg PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rps2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003349_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
2 Hb_023904_010 0.1287764021 - - -
3 Hb_001040_090 0.1305235804 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
4 Hb_135714_010 0.1404313524 - - hypothetical protein POPTR_0017s09310g, partial [Populus trichocarpa]
5 Hb_131719_010 0.1461254945 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
6 Hb_001953_110 0.1467990529 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
7 Hb_031685_010 0.1493049746 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_001631_110 0.1525338621 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
9 Hb_034585_070 0.1532690205 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
10 Hb_065256_010 0.1568141557 - - tryptophan synthase beta chain, putative [Ricinus communis]
11 Hb_005888_050 0.1608830822 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000039_190 0.1643774584 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_000732_160 0.1735052608 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
14 Hb_002477_170 0.1736690039 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_000340_380 0.1743928612 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
16 Hb_005227_030 0.1793955786 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
17 Hb_000479_340 0.1814899706 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
18 Hb_140000_010 0.1826183957 - - receptor-kinase, putative [Ricinus communis]
19 Hb_008887_030 0.1852266693 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
20 Hb_005599_020 0.1862682239 - - Protein MLO, putative [Ricinus communis]

Gene co-expression network

sample Hb_003349_020 Hb_003349_020 Hb_023904_010 Hb_023904_010 Hb_003349_020--Hb_023904_010 Hb_001040_090 Hb_001040_090 Hb_003349_020--Hb_001040_090 Hb_135714_010 Hb_135714_010 Hb_003349_020--Hb_135714_010 Hb_131719_010 Hb_131719_010 Hb_003349_020--Hb_131719_010 Hb_001953_110 Hb_001953_110 Hb_003349_020--Hb_001953_110 Hb_031685_010 Hb_031685_010 Hb_003349_020--Hb_031685_010 Hb_023904_010--Hb_001953_110 Hb_005227_030 Hb_005227_030 Hb_023904_010--Hb_005227_030 Hb_007254_010 Hb_007254_010 Hb_023904_010--Hb_007254_010 Hb_000252_240 Hb_000252_240 Hb_023904_010--Hb_000252_240 Hb_003337_020 Hb_003337_020 Hb_023904_010--Hb_003337_020 Hb_000386_010 Hb_000386_010 Hb_023904_010--Hb_000386_010 Hb_001040_090--Hb_001953_110 Hb_000039_190 Hb_000039_190 Hb_001040_090--Hb_000039_190 Hb_001040_090--Hb_131719_010 Hb_010904_010 Hb_010904_010 Hb_001040_090--Hb_010904_010 Hb_001040_090--Hb_023904_010 Hb_005888_050 Hb_005888_050 Hb_135714_010--Hb_005888_050 Hb_008202_010 Hb_008202_010 Hb_135714_010--Hb_008202_010 Hb_074966_010 Hb_074966_010 Hb_135714_010--Hb_074966_010 Hb_135714_010--Hb_005227_030 Hb_135714_010--Hb_031685_010 Hb_000343_050 Hb_000343_050 Hb_135714_010--Hb_000343_050 Hb_131719_010--Hb_001953_110 Hb_003970_010 Hb_003970_010 Hb_131719_010--Hb_003970_010 Hb_002818_160 Hb_002818_160 Hb_131719_010--Hb_002818_160 Hb_131719_010--Hb_135714_010 Hb_001953_110--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_001953_110--Hb_002010_030 Hb_004109_140 Hb_004109_140 Hb_001953_110--Hb_004109_140 Hb_001953_110--Hb_002818_160 Hb_006789_030 Hb_006789_030 Hb_031685_010--Hb_006789_030 Hb_029095_010 Hb_029095_010 Hb_031685_010--Hb_029095_010 Hb_000732_160 Hb_000732_160 Hb_031685_010--Hb_000732_160 Hb_031685_010--Hb_005888_050 Hb_031685_010--Hb_003337_020 Hb_094439_010 Hb_094439_010 Hb_031685_010--Hb_094439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0787317 0.179049 0.00475129 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00902292 0.097083

CAGE analysis