Hb_003349_030

Information

Type -
Description -
Location Contig3349: 64697-67175
Sequence    

Annotation

kegg
ID rcu:RCOM_0547670
description hypothetical protein
nr
ID XP_012065073.1
description PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LAN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05725 PE=4 SV=1
Gene Ontology
ID GO:0006457
description trigger factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35077: 64692-67185 , PASA_asmbl_35078: 64944-67174
cDNA
(Sanger)
(ID:Location)		 004_P24.ab1: 64809-67180 , 022_L21.ab1: 66655-67163 , 044_H09.ab1: 64822-67180

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003349_030 0.0 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
2 Hb_000877_080 0.1093329586 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
3 Hb_001790_030 0.120150764 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
4 Hb_000056_070 0.1215989663 - - -
5 Hb_003050_250 0.1268500265 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
6 Hb_001712_020 0.1296896265 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
7 Hb_001019_150 0.1298231534 - - Acyl-protein thioesterase, putative [Ricinus communis]
8 Hb_001240_010 0.1303607199 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
9 Hb_002872_050 0.1305024814 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
10 Hb_000394_180 0.1335326437 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
11 Hb_000403_070 0.1344853543 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_007827_010 0.1346699815 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
13 Hb_001435_020 0.1363891724 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
14 Hb_002609_200 0.1388557337 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_001575_060 0.1391534706 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
16 Hb_000984_240 0.1417721948 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
17 Hb_005846_030 0.1435588438 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
18 Hb_006442_020 0.1452309762 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
19 Hb_004125_040 0.1474795437 - - -
20 Hb_000705_290 0.1495856131 - - C-4 methyl sterol oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003349_030 Hb_003349_030 Hb_000877_080 Hb_000877_080 Hb_003349_030--Hb_000877_080 Hb_001790_030 Hb_001790_030 Hb_003349_030--Hb_001790_030 Hb_000056_070 Hb_000056_070 Hb_003349_030--Hb_000056_070 Hb_003050_250 Hb_003050_250 Hb_003349_030--Hb_003050_250 Hb_001712_020 Hb_001712_020 Hb_003349_030--Hb_001712_020 Hb_001019_150 Hb_001019_150 Hb_003349_030--Hb_001019_150 Hb_001056_030 Hb_001056_030 Hb_000877_080--Hb_001056_030 Hb_000877_080--Hb_001712_020 Hb_007827_010 Hb_007827_010 Hb_000877_080--Hb_007827_010 Hb_001318_260 Hb_001318_260 Hb_000877_080--Hb_001318_260 Hb_002872_050 Hb_002872_050 Hb_000877_080--Hb_002872_050 Hb_003813_020 Hb_003813_020 Hb_001790_030--Hb_003813_020 Hb_000984_240 Hb_000984_240 Hb_001790_030--Hb_000984_240 Hb_005846_030 Hb_005846_030 Hb_001790_030--Hb_005846_030 Hb_001790_030--Hb_001712_020 Hb_000254_140 Hb_000254_140 Hb_001790_030--Hb_000254_140 Hb_000056_070--Hb_002872_050 Hb_000056_070--Hb_001019_150 Hb_003880_030 Hb_003880_030 Hb_000056_070--Hb_003880_030 Hb_003106_100 Hb_003106_100 Hb_000056_070--Hb_003106_100 Hb_001329_150 Hb_001329_150 Hb_000056_070--Hb_001329_150 Hb_003050_280 Hb_003050_280 Hb_000056_070--Hb_003050_280 Hb_019113_020 Hb_019113_020 Hb_003050_250--Hb_019113_020 Hb_004125_040 Hb_004125_040 Hb_003050_250--Hb_004125_040 Hb_001575_060 Hb_001575_060 Hb_003050_250--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_003050_250--Hb_001240_010 Hb_001728_060 Hb_001728_060 Hb_003050_250--Hb_001728_060 Hb_000403_070 Hb_000403_070 Hb_003050_250--Hb_000403_070 Hb_001712_020--Hb_005846_030 Hb_011689_120 Hb_011689_120 Hb_001712_020--Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_001712_020--Hb_006846_150 Hb_014834_130 Hb_014834_130 Hb_001712_020--Hb_014834_130 Hb_000317_260 Hb_000317_260 Hb_001712_020--Hb_000317_260 Hb_001019_150--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_001019_150--Hb_002876_020 Hb_001019_150--Hb_007827_010 Hb_001019_150--Hb_001329_150 Hb_001353_010 Hb_001353_010 Hb_001019_150--Hb_001353_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.93232 1.28797 8.21381 12.8537 3.03227 4.91594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5941 20.4736 6.56568 3.88752 18.0429

CAGE analysis