Hb_003349_080

Information

Type -
Description -
Location Contig3349: 112161-115430
Sequence    

Annotation

kegg
ID rcu:RCOM_0547610
description hypothetical protein
nr
ID XP_012065076.1
description PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LI55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05727 PE=4 SV=1
Gene Ontology
ID GO:0005634
description glycine-rich family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35084: 112227-113510 , PASA_asmbl_35085: 114308-114565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003349_080 0.0 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
2 Hb_000318_160 0.052559186 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
3 Hb_000224_140 0.0627905508 - - ribonuclease z, chloroplast, putative [Ricinus communis]
4 Hb_003050_280 0.0755087263 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
5 Hb_068056_030 0.0824551097 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
6 Hb_000680_140 0.0852765164 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
7 Hb_002918_290 0.0857195289 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
8 Hb_004459_040 0.0858846294 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
9 Hb_033153_060 0.0906025112 - - Transcription elongation factor, putative [Ricinus communis]
10 Hb_001218_040 0.0909043805 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
11 Hb_000125_210 0.0914812467 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
12 Hb_000181_300 0.1007875394 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
13 Hb_001076_020 0.1009401266 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
14 Hb_007576_170 0.101594867 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002687_170 0.1032604045 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
16 Hb_001512_080 0.1033971493 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
17 Hb_005474_060 0.1052683791 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
18 Hb_000445_490 0.1060563918 - - -
19 Hb_001136_060 0.1066498398 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
20 Hb_001396_100 0.1070936863 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003349_080 Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_003349_080--Hb_000318_160 Hb_000224_140 Hb_000224_140 Hb_003349_080--Hb_000224_140 Hb_003050_280 Hb_003050_280 Hb_003349_080--Hb_003050_280 Hb_068056_030 Hb_068056_030 Hb_003349_080--Hb_068056_030 Hb_000680_140 Hb_000680_140 Hb_003349_080--Hb_000680_140 Hb_002918_290 Hb_002918_290 Hb_003349_080--Hb_002918_290 Hb_000318_160--Hb_003050_280 Hb_000318_160--Hb_000224_140 Hb_000318_160--Hb_068056_030 Hb_000928_130 Hb_000928_130 Hb_000318_160--Hb_000928_130 Hb_000445_490 Hb_000445_490 Hb_000318_160--Hb_000445_490 Hb_000224_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_005463_140 Hb_005463_140 Hb_000224_140--Hb_005463_140 Hb_004125_040 Hb_004125_040 Hb_003050_280--Hb_004125_040 Hb_003050_280--Hb_000224_140 Hb_002872_050 Hb_002872_050 Hb_003050_280--Hb_002872_050 Hb_007576_170 Hb_007576_170 Hb_003050_280--Hb_007576_170 Hb_068056_030--Hb_002918_290 Hb_006569_100 Hb_006569_100 Hb_068056_030--Hb_006569_100 Hb_068056_030--Hb_001512_080 Hb_068056_030--Hb_005463_140 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260 Hb_004459_040 Hb_004459_040 Hb_000680_140--Hb_004459_040 Hb_153112_030 Hb_153112_030 Hb_000680_140--Hb_153112_030 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_001616_040 Hb_001616_040 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040 Hb_001284_030 Hb_001284_030 Hb_002918_290--Hb_001284_030 Hb_000042_200 Hb_000042_200 Hb_002918_290--Hb_000042_200 Hb_002918_290--Hb_000224_140 Hb_033153_060 Hb_033153_060 Hb_002918_290--Hb_033153_060 Hb_002918_290--Hb_004459_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1168 5.18378 12.4487 12.5697 7.40055 14.4262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.9107 50.5093 33.8454 10.7629 20.8989

CAGE analysis