Hb_003349_090

Information

Type -
Description -
Location Contig3349: 115640-128835
Sequence    

Annotation

kegg
ID rcu:RCOM_0547500
description diphteria toxin resistance protein 2, dph2, putative
nr
ID XP_012065078.1
description PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
swissprot
ID A4QN59
description Diphthamide biosynthesis protein 2 OS=Danio rerio GN=dph2 PE=2 SV=1
trembl
ID A0A067L745
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05728 PE=4 SV=1
Gene Ontology
ID GO:0017183
description diphthamide biosynthesis protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35086: 115722-118488 , PASA_asmbl_35087: 118504-126111 , PASA_asmbl_35088: 118504-126111 , PASA_asmbl_35089: 126261-127874 , PASA_asmbl_35090: 128530-128880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003349_090 0.0 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
2 Hb_010812_120 0.0449775037 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
3 Hb_004837_160 0.0567088446 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
4 Hb_028515_010 0.0612535211 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]
5 Hb_000373_130 0.065249871 - - PREDICTED: protein FAM188A [Jatropha curcas]
6 Hb_004889_010 0.0662527676 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
7 Hb_089032_030 0.0666622409 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
8 Hb_001633_210 0.0691167165 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
9 Hb_003697_040 0.0692717509 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
10 Hb_009615_070 0.0694486677 - - type X protein phosphatase-II [Populus trichocarpa]
11 Hb_001545_170 0.0733941925 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
12 Hb_000016_160 0.0764299686 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
13 Hb_002676_090 0.0776764209 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
14 Hb_002007_210 0.0783532321 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
15 Hb_000614_250 0.0794947563 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
16 Hb_005568_120 0.0801496192 - - Prephenate dehydratase [Hevea brasiliensis]
17 Hb_004899_370 0.081633972 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
18 Hb_004143_150 0.0817062496 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
19 Hb_003053_020 0.0827792999 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
20 Hb_000069_420 0.0832028737 - - Beclin-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_003349_090 Hb_003349_090 Hb_010812_120 Hb_010812_120 Hb_003349_090--Hb_010812_120 Hb_004837_160 Hb_004837_160 Hb_003349_090--Hb_004837_160 Hb_028515_010 Hb_028515_010 Hb_003349_090--Hb_028515_010 Hb_000373_130 Hb_000373_130 Hb_003349_090--Hb_000373_130 Hb_004889_010 Hb_004889_010 Hb_003349_090--Hb_004889_010 Hb_089032_030 Hb_089032_030 Hb_003349_090--Hb_089032_030 Hb_001633_210 Hb_001633_210 Hb_010812_120--Hb_001633_210 Hb_010812_120--Hb_089032_030 Hb_000250_060 Hb_000250_060 Hb_010812_120--Hb_000250_060 Hb_000016_160 Hb_000016_160 Hb_010812_120--Hb_000016_160 Hb_003994_260 Hb_003994_260 Hb_010812_120--Hb_003994_260 Hb_004837_160--Hb_028515_010 Hb_004837_160--Hb_000373_130 Hb_002007_210 Hb_002007_210 Hb_004837_160--Hb_002007_210 Hb_003697_040 Hb_003697_040 Hb_004837_160--Hb_003697_040 Hb_001222_080 Hb_001222_080 Hb_004837_160--Hb_001222_080 Hb_005568_120 Hb_005568_120 Hb_028515_010--Hb_005568_120 Hb_028515_010--Hb_000373_130 Hb_114310_080 Hb_114310_080 Hb_028515_010--Hb_114310_080 Hb_000985_060 Hb_000985_060 Hb_028515_010--Hb_000985_060 Hb_001519_050 Hb_001519_050 Hb_000373_130--Hb_001519_050 Hb_000373_130--Hb_005568_120 Hb_000567_120 Hb_000567_120 Hb_000373_130--Hb_000567_120 Hb_005551_040 Hb_005551_040 Hb_004889_010--Hb_005551_040 Hb_004889_010--Hb_003697_040 Hb_009615_070 Hb_009615_070 Hb_004889_010--Hb_009615_070 Hb_034380_020 Hb_034380_020 Hb_004889_010--Hb_034380_020 Hb_004889_010--Hb_089032_030 Hb_003502_060 Hb_003502_060 Hb_089032_030--Hb_003502_060 Hb_089032_030--Hb_009615_070 Hb_010423_030 Hb_010423_030 Hb_089032_030--Hb_010423_030 Hb_001545_170 Hb_001545_170 Hb_089032_030--Hb_001545_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.59854 3.02145 2.96436 3.83725 2.02087 3.89607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.28095 7.71933 7.0514 3.79203 2.75594

CAGE analysis