Hb_003352_050

Information

Type -
Description -
Location Contig3352: 101865-113317
Sequence    

Annotation

kegg
ID rcu:RCOM_1712560
description pseudouridylate synthase, putative (EC:5.4.99.12)
nr
ID XP_012084292.1
description PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
swissprot
ID Q8KDR7
description tRNA pseudouridine synthase A OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) GN=truA PE=3 SV=1
trembl
ID A0A067JV59
description tRNA pseudouridine synthase OS=Jatropha curcas GN=JCGZ_19781 PE=3 SV=1
Gene Ontology
ID GO:0003723
description trna pseudouridine synthase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35113: 101802-113229
cDNA
(Sanger)
(ID:Location)		 035_E09.ab1: 110562-113229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003352_050 0.0 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
2 Hb_000176_110 0.0601866906 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
3 Hb_002377_040 0.066874296 - - serine/threonine protein kinase, putative [Ricinus communis]
4 Hb_005754_020 0.0692875368 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
5 Hb_002044_090 0.0706681626 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
6 Hb_000684_180 0.0761909584 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
7 Hb_000062_230 0.0798042799 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
8 Hb_002014_080 0.0804220328 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
9 Hb_000462_150 0.0857461239 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
10 Hb_000176_140 0.0857584118 - - PREDICTED: bystin [Jatropha curcas]
11 Hb_000077_050 0.085921624 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_003453_020 0.0870762058 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
13 Hb_006922_080 0.0879321896 - - PREDICTED: E3 ubiquitin-protein ligase SINAT3-like [Glycine max]
14 Hb_002681_140 0.0888878129 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
15 Hb_002391_110 0.0893543921 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
16 Hb_003384_030 0.0894686771 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
17 Hb_000085_340 0.0900409837 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
18 Hb_023226_060 0.0905962291 - - unnamed protein product [Vitis vinifera]
19 Hb_004096_170 0.0908120857 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
20 Hb_127979_010 0.0929954502 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]

Gene co-expression network

sample Hb_003352_050 Hb_003352_050 Hb_000176_110 Hb_000176_110 Hb_003352_050--Hb_000176_110 Hb_002377_040 Hb_002377_040 Hb_003352_050--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_003352_050--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_003352_050--Hb_002044_090 Hb_000684_180 Hb_000684_180 Hb_003352_050--Hb_000684_180 Hb_000062_230 Hb_000062_230 Hb_003352_050--Hb_000062_230 Hb_003453_020 Hb_003453_020 Hb_000176_110--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000176_110--Hb_000012_090 Hb_000003_090 Hb_000003_090 Hb_000176_110--Hb_000003_090 Hb_006922_080 Hb_006922_080 Hb_000176_110--Hb_006922_080 Hb_000077_050 Hb_000077_050 Hb_000176_110--Hb_000077_050 Hb_002377_040--Hb_000062_230 Hb_002377_040--Hb_005754_020 Hb_002377_040--Hb_002044_090 Hb_000028_470 Hb_000028_470 Hb_002377_040--Hb_000028_470 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340 Hb_005754_020--Hb_002044_090 Hb_005754_020--Hb_000062_230 Hb_005754_020--Hb_000028_470 Hb_000176_140 Hb_000176_140 Hb_005754_020--Hb_000176_140 Hb_002044_090--Hb_000062_230 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_000573_040 Hb_000573_040 Hb_000684_180--Hb_000573_040 Hb_000631_150 Hb_000631_150 Hb_000684_180--Hb_000631_150 Hb_000134_360 Hb_000134_360 Hb_000684_180--Hb_000134_360 Hb_011644_020 Hb_011644_020 Hb_000684_180--Hb_011644_020 Hb_001195_030 Hb_001195_030 Hb_000684_180--Hb_001195_030 Hb_004374_010 Hb_004374_010 Hb_000062_230--Hb_004374_010 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.1106 8.74077 8.29821 9.55729 59.632 66.3452
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.2819 21.7433 26.6135 13.0263 6.27872

CAGE analysis