Hb_003360_040

Information

Type -
Description -
Location Contig3360: 77512-81366
Sequence    

Annotation

kegg
ID rcu:RCOM_0293140
description hypothetical protein
nr
ID XP_012072988.1
description PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KM60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35199: 77514-81365 , PASA_asmbl_35200: 80599-80700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003360_040 0.0 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
2 Hb_002119_130 0.0559836255 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
3 Hb_007218_120 0.0733581485 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
4 Hb_000454_090 0.0811767878 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
5 Hb_000920_200 0.0852449022 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
6 Hb_001019_100 0.0862753522 - - BnaC02g13240D [Brassica napus]
7 Hb_000140_090 0.08807515 - - PREDICTED: C-terminal binding protein AN [Jatropha curcas]
8 Hb_001541_120 0.088388629 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
9 Hb_000300_430 0.0904530587 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
10 Hb_000173_410 0.092193908 - - PREDICTED: BI1-like protein [Jatropha curcas]
11 Hb_001016_100 0.0923916242 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
12 Hb_004429_020 0.0927290605 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
13 Hb_001504_330 0.0936626652 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
14 Hb_003622_040 0.095143117 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
15 Hb_000964_030 0.0963834877 - - ADP/ATP carrier 2 [Theobroma cacao]
16 Hb_000110_140 0.0966231152 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
17 Hb_000928_070 0.0973886801 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
18 Hb_005765_050 0.0987888183 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
19 Hb_000252_100 0.0988504169 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
20 Hb_000934_190 0.0993843858 - - SER/ARG-rich protein 34A [Theobroma cacao]

Gene co-expression network

sample Hb_003360_040 Hb_003360_040 Hb_002119_130 Hb_002119_130 Hb_003360_040--Hb_002119_130 Hb_007218_120 Hb_007218_120 Hb_003360_040--Hb_007218_120 Hb_000454_090 Hb_000454_090 Hb_003360_040--Hb_000454_090 Hb_000920_200 Hb_000920_200 Hb_003360_040--Hb_000920_200 Hb_001019_100 Hb_001019_100 Hb_003360_040--Hb_001019_100 Hb_000140_090 Hb_000140_090 Hb_003360_040--Hb_000140_090 Hb_002119_130--Hb_007218_120 Hb_002119_130--Hb_000920_200 Hb_001218_030 Hb_001218_030 Hb_002119_130--Hb_001218_030 Hb_000173_410 Hb_000173_410 Hb_002119_130--Hb_000173_410 Hb_002119_130--Hb_000454_090 Hb_007218_120--Hb_000173_410 Hb_002660_170 Hb_002660_170 Hb_007218_120--Hb_002660_170 Hb_000110_140 Hb_000110_140 Hb_007218_120--Hb_000110_140 Hb_003376_180 Hb_003376_180 Hb_007218_120--Hb_003376_180 Hb_000454_090--Hb_000173_410 Hb_000252_100 Hb_000252_100 Hb_000454_090--Hb_000252_100 Hb_004078_040 Hb_004078_040 Hb_000454_090--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_005765_050 Hb_005765_050 Hb_000454_090--Hb_005765_050 Hb_000920_200--Hb_001218_030 Hb_006573_190 Hb_006573_190 Hb_000920_200--Hb_006573_190 Hb_001828_150 Hb_001828_150 Hb_000920_200--Hb_001828_150 Hb_000853_150 Hb_000853_150 Hb_000920_200--Hb_000853_150 Hb_001195_060 Hb_001195_060 Hb_000920_200--Hb_001195_060 Hb_003124_150 Hb_003124_150 Hb_001019_100--Hb_003124_150 Hb_001019_100--Hb_000920_200 Hb_000309_130 Hb_000309_130 Hb_001019_100--Hb_000309_130 Hb_001019_100--Hb_002119_130 Hb_006740_030 Hb_006740_030 Hb_001019_100--Hb_006740_030 Hb_000140_090--Hb_006740_030 Hb_000928_070 Hb_000928_070 Hb_000140_090--Hb_000928_070 Hb_001541_120 Hb_001541_120 Hb_000140_090--Hb_001541_120 Hb_007533_040 Hb_007533_040 Hb_000140_090--Hb_007533_040 Hb_005016_040 Hb_005016_040 Hb_000140_090--Hb_005016_040 Hb_010578_080 Hb_010578_080 Hb_000140_090--Hb_010578_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.3067 37.6251 55.598 65.6413 18.404 15.5039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.4176 75.239 84.2235 55.4074 59.8107

CAGE analysis