Hb_003362_030

Information

Type -
Description -
Location Contig3362: 20664-25072
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08440g
description hypothetical protein
nr
ID XP_006373070.1
description hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
swissprot
ID Q9D099
description Alkaline ceramidase 3 OS=Mus musculus GN=Acer3 PE=2 SV=1
trembl
ID U5FNC0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s08440g PE=4 SV=1
Gene Ontology
ID GO:0016021
description alkaline ceramidase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35201: 20870-25018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003362_030 0.0 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
2 Hb_000457_180 0.0726664507 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
3 Hb_001341_150 0.0891500406 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
4 Hb_011609_020 0.0904549344 - - conserved hypothetical protein [Ricinus communis]
5 Hb_148121_040 0.0906357186 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
6 Hb_008071_020 0.0908838932 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
7 Hb_021068_040 0.0910853383 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
8 Hb_000327_380 0.0917448396 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
9 Hb_055062_020 0.093035469 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
10 Hb_000302_140 0.0934249819 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
11 Hb_026889_030 0.0985775696 - - protein with unknown function [Ricinus communis]
12 Hb_000608_050 0.0992706881 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
13 Hb_000045_310 0.1017459626 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
14 Hb_000805_240 0.1017597851 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
15 Hb_000115_220 0.1021824831 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
16 Hb_020025_040 0.102244662 - - sodium-bile acid cotransporter, putative [Ricinus communis]
17 Hb_006326_040 0.1023200913 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002228_070 0.1025982994 - - inosine triphosphate pyrophosphatase, putative [Ricinus communis]
19 Hb_000189_240 0.1028999582 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
20 Hb_002374_080 0.1032848156 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003362_030 Hb_003362_030 Hb_000457_180 Hb_000457_180 Hb_003362_030--Hb_000457_180 Hb_001341_150 Hb_001341_150 Hb_003362_030--Hb_001341_150 Hb_011609_020 Hb_011609_020 Hb_003362_030--Hb_011609_020 Hb_148121_040 Hb_148121_040 Hb_003362_030--Hb_148121_040 Hb_008071_020 Hb_008071_020 Hb_003362_030--Hb_008071_020 Hb_021068_040 Hb_021068_040 Hb_003362_030--Hb_021068_040 Hb_000457_180--Hb_001341_150 Hb_000457_180--Hb_008071_020 Hb_012565_070 Hb_012565_070 Hb_000457_180--Hb_012565_070 Hb_001279_080 Hb_001279_080 Hb_000457_180--Hb_001279_080 Hb_150651_040 Hb_150651_040 Hb_000457_180--Hb_150651_040 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_010098_050 Hb_010098_050 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010 Hb_000189_240 Hb_000189_240 Hb_011609_020--Hb_000189_240 Hb_010175_040 Hb_010175_040 Hb_011609_020--Hb_010175_040 Hb_006831_120 Hb_006831_120 Hb_011609_020--Hb_006831_120 Hb_004052_050 Hb_004052_050 Hb_011609_020--Hb_004052_050 Hb_000302_140 Hb_000302_140 Hb_011609_020--Hb_000302_140 Hb_000608_050 Hb_000608_050 Hb_148121_040--Hb_000608_050 Hb_000638_250 Hb_000638_250 Hb_148121_040--Hb_000638_250 Hb_004696_080 Hb_004696_080 Hb_148121_040--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_148121_040--Hb_152784_010 Hb_005054_210 Hb_005054_210 Hb_148121_040--Hb_005054_210 Hb_000403_060 Hb_000403_060 Hb_148121_040--Hb_000403_060 Hb_008071_020--Hb_001931_010 Hb_008071_020--Hb_001279_080 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_000805_240 Hb_000805_240 Hb_021068_040--Hb_000805_240 Hb_005846_040 Hb_005846_040 Hb_021068_040--Hb_005846_040 Hb_021068_040--Hb_006615_240 Hb_000205_090 Hb_000205_090 Hb_021068_040--Hb_000205_090 Hb_003582_060 Hb_003582_060 Hb_021068_040--Hb_003582_060 Hb_003151_040 Hb_003151_040 Hb_021068_040--Hb_003151_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8076 14.088 36.0046 31.3397 12.7612 14.37
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.766 43.5845 29.7216 15.4417 11.4495

CAGE analysis