Hb_003362_040

Information

Type -
Description -
Location Contig3362: 29522-37090
Sequence    

Annotation

kegg
ID pop:POPTR_0017s08450g
description methionyl-tRNA synthetase family protein
nr
ID XP_012071110.1
description PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
swissprot
ID Q9ZTS1
description Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2
trembl
ID A0A067KT86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01104 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable methionine--trna ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35205: 29562-36969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003362_040 0.0 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
2 Hb_000915_050 0.0465694577 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002200_130 0.0621983914 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
4 Hb_000244_250 0.0628262835 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
5 Hb_007188_070 0.0656590653 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
6 Hb_009627_010 0.0680640137 - - Protein dom-3, putative [Ricinus communis]
7 Hb_000034_050 0.0690158253 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
8 Hb_001019_170 0.0698791106 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
9 Hb_004204_020 0.0698972129 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
10 Hb_000184_130 0.0700407392 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
11 Hb_000283_070 0.0704529729 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
12 Hb_022408_010 0.0712216703 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
13 Hb_000160_040 0.0721127314 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
14 Hb_004055_040 0.0722816067 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
15 Hb_000048_140 0.0723849524 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
16 Hb_010931_080 0.0729329155 - - PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Jatropha curcas]
17 Hb_001797_050 0.0741828569 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
18 Hb_000789_080 0.0742817875 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
19 Hb_001680_010 0.0759674212 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
20 Hb_005532_050 0.0760027749 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]

Gene co-expression network

sample Hb_003362_040 Hb_003362_040 Hb_000915_050 Hb_000915_050 Hb_003362_040--Hb_000915_050 Hb_002200_130 Hb_002200_130 Hb_003362_040--Hb_002200_130 Hb_000244_250 Hb_000244_250 Hb_003362_040--Hb_000244_250 Hb_007188_070 Hb_007188_070 Hb_003362_040--Hb_007188_070 Hb_009627_010 Hb_009627_010 Hb_003362_040--Hb_009627_010 Hb_000034_050 Hb_000034_050 Hb_003362_040--Hb_000034_050 Hb_000915_050--Hb_000244_250 Hb_000184_130 Hb_000184_130 Hb_000915_050--Hb_000184_130 Hb_004055_040 Hb_004055_040 Hb_000915_050--Hb_004055_040 Hb_000283_070 Hb_000283_070 Hb_000915_050--Hb_000283_070 Hb_004204_020 Hb_004204_020 Hb_000915_050--Hb_004204_020 Hb_000207_390 Hb_000207_390 Hb_002200_130--Hb_000207_390 Hb_001301_200 Hb_001301_200 Hb_002200_130--Hb_001301_200 Hb_000048_140 Hb_000048_140 Hb_002200_130--Hb_000048_140 Hb_028639_010 Hb_028639_010 Hb_002200_130--Hb_028639_010 Hb_001797_050 Hb_001797_050 Hb_002200_130--Hb_001797_050 Hb_000005_380 Hb_000005_380 Hb_000244_250--Hb_000005_380 Hb_007586_030 Hb_007586_030 Hb_000244_250--Hb_007586_030 Hb_022408_010 Hb_022408_010 Hb_000244_250--Hb_022408_010 Hb_001541_020 Hb_001541_020 Hb_000244_250--Hb_001541_020 Hb_002304_090 Hb_002304_090 Hb_007188_070--Hb_002304_090 Hb_011174_090 Hb_011174_090 Hb_007188_070--Hb_011174_090 Hb_000645_120 Hb_000645_120 Hb_007188_070--Hb_000645_120 Hb_007188_070--Hb_009627_010 Hb_140171_010 Hb_140171_010 Hb_007188_070--Hb_140171_010 Hb_000160_040 Hb_000160_040 Hb_009627_010--Hb_000160_040 Hb_000618_030 Hb_000618_030 Hb_009627_010--Hb_000618_030 Hb_001172_010 Hb_001172_010 Hb_009627_010--Hb_001172_010 Hb_010381_060 Hb_010381_060 Hb_009627_010--Hb_010381_060 Hb_009627_010--Hb_002304_090 Hb_033834_060 Hb_033834_060 Hb_009627_010--Hb_033834_060 Hb_002400_180 Hb_002400_180 Hb_000034_050--Hb_002400_180 Hb_000322_100 Hb_000322_100 Hb_000034_050--Hb_000322_100 Hb_009265_080 Hb_009265_080 Hb_000034_050--Hb_009265_080 Hb_001863_110 Hb_001863_110 Hb_000034_050--Hb_001863_110 Hb_003581_120 Hb_003581_120 Hb_000034_050--Hb_003581_120 Hb_000390_060 Hb_000390_060 Hb_000034_050--Hb_000390_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
107.352 57.7258 31.3606 38.3047 97.7508 136.949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.7851 37.2567 79.0949 55.8429 29.5471

CAGE analysis