Hb_003362_060

Information

Type -
Description -
Location Contig3362: 56693-59241
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003362_060 0.0 - - -
2 Hb_131949_010 0.0229552583 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
3 Hb_084426_010 0.1331887831 - - -
4 Hb_000171_040 0.137799268 - - -
5 Hb_184798_040 0.1594932032 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_034569_020 0.2156702025 - - -
7 Hb_004899_280 0.2350370179 - - -
8 Hb_005975_020 0.2372772048 - - -
9 Hb_009742_010 0.2504684356 - - -
10 Hb_000922_310 0.2566167192 transcription factor TF Family: MYB PREDICTED: transcription factor MYB98-like [Jatropha curcas]
11 Hb_000146_060 0.2580103889 - - -
12 Hb_022693_150 0.2724491332 - - -
13 Hb_010979_010 0.2937623206 - - -
14 Hb_171659_010 0.3009415596 - - PREDICTED: uncharacterized protein LOC104903214 [Beta vulgaris subsp. vulgaris]
15 Hb_008727_070 0.3014481581 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
16 Hb_004330_030 0.3020058311 - - -
17 Hb_004939_020 0.3109719775 - - gag/pol protein [Bryonia dioica]
18 Hb_006816_510 0.3192183458 - - Pectinesterase inhibitor, putative [Ricinus communis]
19 Hb_070745_010 0.3252690158 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
20 Hb_000107_320 0.3328531627 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]

Gene co-expression network

sample Hb_003362_060 Hb_003362_060 Hb_131949_010 Hb_131949_010 Hb_003362_060--Hb_131949_010 Hb_084426_010 Hb_084426_010 Hb_003362_060--Hb_084426_010 Hb_000171_040 Hb_000171_040 Hb_003362_060--Hb_000171_040 Hb_184798_040 Hb_184798_040 Hb_003362_060--Hb_184798_040 Hb_034569_020 Hb_034569_020 Hb_003362_060--Hb_034569_020 Hb_004899_280 Hb_004899_280 Hb_003362_060--Hb_004899_280 Hb_131949_010--Hb_084426_010 Hb_131949_010--Hb_184798_040 Hb_131949_010--Hb_000171_040 Hb_131949_010--Hb_034569_020 Hb_131949_010--Hb_004899_280 Hb_022693_150 Hb_022693_150 Hb_084426_010--Hb_022693_150 Hb_084426_010--Hb_000171_040 Hb_000922_310 Hb_000922_310 Hb_084426_010--Hb_000922_310 Hb_000362_240 Hb_000362_240 Hb_084426_010--Hb_000362_240 Hb_006816_510 Hb_006816_510 Hb_000171_040--Hb_006816_510 Hb_000171_040--Hb_184798_040 Hb_005975_020 Hb_005975_020 Hb_000171_040--Hb_005975_020 Hb_184798_040--Hb_034569_020 Hb_009742_010 Hb_009742_010 Hb_184798_040--Hb_009742_010 Hb_184798_040--Hb_004899_280 Hb_034569_020--Hb_000922_310 Hb_034569_020--Hb_009742_010 Hb_034569_020--Hb_004899_280 Hb_010979_010 Hb_010979_010 Hb_034569_020--Hb_010979_010 Hb_004899_280--Hb_000922_310 Hb_004899_280--Hb_005975_020 Hb_004899_280--Hb_009742_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.323565 0.303884 0 0 0.331415 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis