Hb_003362_070

Information

Type -
Description -
Location Contig3362: 59704-75582
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32510g
description POPTRDRAFT_752841; hypothetical protein
nr
ID XP_012071107.1
description PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
swissprot
ID A5PK19
description Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1
trembl
ID A0A067L4C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01102 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase-like protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35208: 60545-62363 , PASA_asmbl_35209: 62426-71069 , PASA_asmbl_35210: 65822-65930 , PASA_asmbl_35212: 72242-73552 , PASA_asmbl_35213: 72242-72787 , PASA_asmbl_35214: 73573-75249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003362_070 0.0 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
2 Hb_016898_010 0.0387288831 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
3 Hb_004935_030 0.0412989289 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
4 Hb_048476_180 0.0441509944 - - PREDICTED: nuclear pore complex protein NUP155 [Jatropha curcas]
5 Hb_003966_030 0.0499154848 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]
6 Hb_000922_370 0.0540934464 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
7 Hb_003044_020 0.0572838995 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
8 Hb_000183_020 0.0573990098 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
9 Hb_000084_120 0.0576069123 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]
10 Hb_002329_040 0.0600093656 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
11 Hb_001617_060 0.0603156862 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
12 Hb_003371_110 0.0622763078 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
13 Hb_000457_260 0.0633670037 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
14 Hb_003952_150 0.0634821012 - - PREDICTED: cactin [Jatropha curcas]
15 Hb_003428_070 0.0641175678 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
16 Hb_000190_120 0.064207828 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
17 Hb_000101_240 0.0645797936 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
18 Hb_002823_030 0.0654590955 - - -
19 Hb_004102_140 0.065901635 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003680_150 0.0664080097 - - srpk, putative [Ricinus communis]

Gene co-expression network

sample Hb_003362_070 Hb_003362_070 Hb_016898_010 Hb_016898_010 Hb_003362_070--Hb_016898_010 Hb_004935_030 Hb_004935_030 Hb_003362_070--Hb_004935_030 Hb_048476_180 Hb_048476_180 Hb_003362_070--Hb_048476_180 Hb_003966_030 Hb_003966_030 Hb_003362_070--Hb_003966_030 Hb_000922_370 Hb_000922_370 Hb_003362_070--Hb_000922_370 Hb_003044_020 Hb_003044_020 Hb_003362_070--Hb_003044_020 Hb_000084_120 Hb_000084_120 Hb_016898_010--Hb_000084_120 Hb_000101_240 Hb_000101_240 Hb_016898_010--Hb_000101_240 Hb_016898_010--Hb_048476_180 Hb_003428_070 Hb_003428_070 Hb_016898_010--Hb_003428_070 Hb_003952_150 Hb_003952_150 Hb_016898_010--Hb_003952_150 Hb_000083_160 Hb_000083_160 Hb_004935_030--Hb_000083_160 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_000457_260 Hb_000457_260 Hb_004935_030--Hb_000457_260 Hb_001617_060 Hb_001617_060 Hb_004935_030--Hb_001617_060 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110 Hb_007307_020 Hb_007307_020 Hb_048476_180--Hb_007307_020 Hb_009411_010 Hb_009411_010 Hb_048476_180--Hb_009411_010 Hb_048476_180--Hb_000101_240 Hb_048476_180--Hb_004935_030 Hb_004102_140 Hb_004102_140 Hb_003966_030--Hb_004102_140 Hb_003966_030--Hb_001617_060 Hb_000613_080 Hb_000613_080 Hb_003966_030--Hb_000613_080 Hb_003966_030--Hb_003044_020 Hb_000347_130 Hb_000347_130 Hb_003966_030--Hb_000347_130 Hb_000922_370--Hb_003044_020 Hb_007426_130 Hb_007426_130 Hb_000922_370--Hb_007426_130 Hb_002329_040 Hb_002329_040 Hb_000922_370--Hb_002329_040 Hb_002174_020 Hb_002174_020 Hb_000922_370--Hb_002174_020 Hb_000160_290 Hb_000160_290 Hb_000922_370--Hb_000160_290 Hb_000183_020 Hb_000183_020 Hb_003044_020--Hb_000183_020 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_003044_020--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.4979 8.77211 4.84007 6.44628 10.711 14.9342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15311 5.35601 7.02008 8.95575 7.2699

CAGE analysis