Hb_003363_100

Information

Type -
Description -
Location Contig3363: 107849-108637
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003746
description elongation factor 1-gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003363_100 0.0 - - -
2 Hb_000506_060 0.002360989 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
3 Hb_168078_010 0.0030282505 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like, partial [Jatropha curcas]
4 Hb_027802_030 0.0057209008 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
5 Hb_007524_020 0.0059642473 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
6 Hb_000574_060 0.0067839495 - - hypothetical protein F775_19731 [Aegilops tauschii]
7 Hb_001300_110 0.0081832496 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
8 Hb_006469_100 0.0083291928 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
9 Hb_000243_270 0.009214111 - - Pectinesterase-2 precursor, putative [Ricinus communis]
10 Hb_064476_010 0.0132365318 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
11 Hb_141016_010 0.0168147505 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
12 Hb_013607_020 0.0172349665 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
13 Hb_166937_010 0.0188361026 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
14 Hb_004375_090 0.0202390436 - - hypothetical protein JCGZ_13971 [Jatropha curcas]
15 Hb_000771_010 0.0229835289 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_001104_030 0.0235016054 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
17 Hb_001579_080 0.0269155723 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_015754_010 0.0289381013 - - Galactose oxidase precursor, putative [Ricinus communis]
19 Hb_009711_060 0.030443642 - - -
20 Hb_000185_190 0.0304694826 - - hypothetical protein L484_017526 [Morus notabilis]

Gene co-expression network

sample Hb_003363_100 Hb_003363_100 Hb_000506_060 Hb_000506_060 Hb_003363_100--Hb_000506_060 Hb_168078_010 Hb_168078_010 Hb_003363_100--Hb_168078_010 Hb_027802_030 Hb_027802_030 Hb_003363_100--Hb_027802_030 Hb_007524_020 Hb_007524_020 Hb_003363_100--Hb_007524_020 Hb_000574_060 Hb_000574_060 Hb_003363_100--Hb_000574_060 Hb_001300_110 Hb_001300_110 Hb_003363_100--Hb_001300_110 Hb_000506_060--Hb_007524_020 Hb_000506_060--Hb_168078_010 Hb_000506_060--Hb_001300_110 Hb_000243_270 Hb_000243_270 Hb_000506_060--Hb_000243_270 Hb_000506_060--Hb_027802_030 Hb_168078_010--Hb_027802_030 Hb_168078_010--Hb_000574_060 Hb_006469_100 Hb_006469_100 Hb_168078_010--Hb_006469_100 Hb_168078_010--Hb_007524_020 Hb_027802_030--Hb_000574_060 Hb_027802_030--Hb_006469_100 Hb_141016_010 Hb_141016_010 Hb_027802_030--Hb_141016_010 Hb_007524_020--Hb_001300_110 Hb_007524_020--Hb_000243_270 Hb_064476_010 Hb_064476_010 Hb_007524_020--Hb_064476_010 Hb_000574_060--Hb_006469_100 Hb_000574_060--Hb_000506_060 Hb_000574_060--Hb_141016_010 Hb_001300_110--Hb_000243_270 Hb_001300_110--Hb_064476_010 Hb_013607_020 Hb_013607_020 Hb_001300_110--Hb_013607_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.164485 0.104665 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis