Hb_003363_110

Information

Type -
Description -
Location Contig3363: 109877-112872
Sequence    

Annotation

kegg
ID rcu:RCOM_0757660
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002526431.1
description protein with unknown function [Ricinus communis]
swissprot
ID O04486
description Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1
trembl
ID B9SKB2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0757660 PE=3 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35222: 109949-112829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003363_110 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000494_020 0.0635510273 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
3 Hb_028841_030 0.0641509976 - - -
4 Hb_010407_040 0.0674776372 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
5 Hb_002233_150 0.0740716561 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
6 Hb_005186_050 0.0742410858 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
7 Hb_145880_030 0.0753880381 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
8 Hb_007154_020 0.0767265484 - - -
9 Hb_007576_040 0.0791701865 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
10 Hb_002811_260 0.080378899 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
11 Hb_000141_040 0.0804790938 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
12 Hb_011381_060 0.0821008178 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
13 Hb_001662_070 0.0832743032 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
14 Hb_003607_150 0.0835618243 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
15 Hb_000251_070 0.0839974163 - - hypothetical protein L484_010641 [Morus notabilis]
16 Hb_000000_160 0.0840831393 - - PREDICTED: membrin-11 [Jatropha curcas]
17 Hb_007477_070 0.0846609951 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
18 Hb_010661_030 0.0851887964 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
19 Hb_000933_180 0.0871666904 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
20 Hb_000670_020 0.0878177479 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003363_110 Hb_003363_110 Hb_000494_020 Hb_000494_020 Hb_003363_110--Hb_000494_020 Hb_028841_030 Hb_028841_030 Hb_003363_110--Hb_028841_030 Hb_010407_040 Hb_010407_040 Hb_003363_110--Hb_010407_040 Hb_002233_150 Hb_002233_150 Hb_003363_110--Hb_002233_150 Hb_005186_050 Hb_005186_050 Hb_003363_110--Hb_005186_050 Hb_145880_030 Hb_145880_030 Hb_003363_110--Hb_145880_030 Hb_000494_020--Hb_010407_040 Hb_002105_090 Hb_002105_090 Hb_000494_020--Hb_002105_090 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_028841_030--Hb_005186_050 Hb_011381_060 Hb_011381_060 Hb_028841_030--Hb_011381_060 Hb_003607_150 Hb_003607_150 Hb_028841_030--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010 Hb_010407_040--Hb_000163_160 Hb_010407_040--Hb_145880_030 Hb_007778_030 Hb_007778_030 Hb_010407_040--Hb_007778_030 Hb_000000_160 Hb_000000_160 Hb_010407_040--Hb_000000_160 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_010661_030 Hb_010661_030 Hb_002233_150--Hb_010661_030 Hb_003292_040 Hb_003292_040 Hb_002233_150--Hb_003292_040 Hb_002233_150--Hb_000933_180 Hb_005186_050--Hb_003069_010 Hb_005186_050--Hb_003607_150 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_145880_030--Hb_007778_030 Hb_000141_040 Hb_000141_040 Hb_145880_030--Hb_000141_040 Hb_001662_070 Hb_001662_070 Hb_145880_030--Hb_001662_070 Hb_165132_010 Hb_165132_010 Hb_145880_030--Hb_165132_010 Hb_023226_040 Hb_023226_040 Hb_145880_030--Hb_023226_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.326 31.4861 77.0517 53.5535 94.3031 81.8643
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.114 143.401 64.5691 37.2945 17.695

CAGE analysis