Hb_003363_120

Information

Type -
Description -
Location Contig3363: 113667-117481
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23520g
description GTP-binding family protein
nr
ID XP_006385060.1
description GTP-binding family protein [Populus trichocarpa]
swissprot
ID Q9ZRE2
description Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1
trembl
ID B9N0F8
description GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0004s23520g PE=4 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rabd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35223: 113704-117424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003363_120 0.0 - - GTP-binding family protein [Populus trichocarpa]
2 Hb_003688_130 0.1032944912 - - phosphoserine phosphatase, putative [Ricinus communis]
3 Hb_029921_040 0.1050444992 - - conserved hypothetical protein [Ricinus communis]
4 Hb_184570_010 0.1071766121 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
5 Hb_000111_380 0.1090351742 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
6 Hb_002601_110 0.112498234 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
7 Hb_054865_120 0.1130354329 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
8 Hb_001579_270 0.1141154949 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
9 Hb_002820_050 0.1162747713 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
10 Hb_002495_040 0.1170470177 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
11 Hb_001135_060 0.1173540661 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
12 Hb_005862_010 0.1173961223 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
13 Hb_000494_040 0.1175428161 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
14 Hb_001936_080 0.1177784533 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
15 Hb_002271_020 0.1187887934 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
16 Hb_012092_010 0.1195311705 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
17 Hb_000960_060 0.1199325398 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
18 Hb_003878_010 0.1204187752 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
19 Hb_011671_040 0.120656892 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
20 Hb_011671_090 0.1217874597 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003363_120 Hb_003363_120 Hb_003688_130 Hb_003688_130 Hb_003363_120--Hb_003688_130 Hb_029921_040 Hb_029921_040 Hb_003363_120--Hb_029921_040 Hb_184570_010 Hb_184570_010 Hb_003363_120--Hb_184570_010 Hb_000111_380 Hb_000111_380 Hb_003363_120--Hb_000111_380 Hb_002601_110 Hb_002601_110 Hb_003363_120--Hb_002601_110 Hb_054865_120 Hb_054865_120 Hb_003363_120--Hb_054865_120 Hb_003688_130--Hb_054865_120 Hb_005288_190 Hb_005288_190 Hb_003688_130--Hb_005288_190 Hb_002495_040 Hb_002495_040 Hb_003688_130--Hb_002495_040 Hb_000025_470 Hb_000025_470 Hb_003688_130--Hb_000025_470 Hb_001579_270 Hb_001579_270 Hb_003688_130--Hb_001579_270 Hb_008748_040 Hb_008748_040 Hb_003688_130--Hb_008748_040 Hb_000189_340 Hb_000189_340 Hb_029921_040--Hb_000189_340 Hb_002687_130 Hb_002687_130 Hb_029921_040--Hb_002687_130 Hb_029921_040--Hb_002495_040 Hb_000373_240 Hb_000373_240 Hb_029921_040--Hb_000373_240 Hb_114343_010 Hb_114343_010 Hb_029921_040--Hb_114343_010 Hb_000272_020 Hb_000272_020 Hb_029921_040--Hb_000272_020 Hb_000416_070 Hb_000416_070 Hb_184570_010--Hb_000416_070 Hb_003011_040 Hb_003011_040 Hb_184570_010--Hb_003011_040 Hb_003878_010 Hb_003878_010 Hb_184570_010--Hb_003878_010 Hb_000155_180 Hb_000155_180 Hb_184570_010--Hb_000155_180 Hb_004223_220 Hb_004223_220 Hb_184570_010--Hb_004223_220 Hb_005731_050 Hb_005731_050 Hb_000111_380--Hb_005731_050 Hb_004108_070 Hb_004108_070 Hb_000111_380--Hb_004108_070 Hb_000111_380--Hb_002601_110 Hb_000656_170 Hb_000656_170 Hb_000111_380--Hb_000656_170 Hb_001140_370 Hb_001140_370 Hb_000111_380--Hb_001140_370 Hb_033594_120 Hb_033594_120 Hb_000111_380--Hb_033594_120 Hb_002820_050 Hb_002820_050 Hb_002601_110--Hb_002820_050 Hb_002245_030 Hb_002245_030 Hb_002601_110--Hb_002245_030 Hb_006059_050 Hb_006059_050 Hb_002601_110--Hb_006059_050 Hb_002601_110--Hb_004108_070 Hb_001124_090 Hb_001124_090 Hb_002601_110--Hb_001124_090 Hb_054865_120--Hb_000025_470 Hb_002728_070 Hb_002728_070 Hb_054865_120--Hb_002728_070 Hb_028227_020 Hb_028227_020 Hb_054865_120--Hb_028227_020 Hb_054865_120--Hb_008748_040 Hb_001922_170 Hb_001922_170 Hb_054865_120--Hb_001922_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.4393 25.1059 66.5776 69.4873 71.4583 115.206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.811 79.4131 30.9534 29.1222 33.8087

CAGE analysis