Hb_003368_070

Information

Type -
Description -
Location Contig3368: 126111-127038
Sequence    

Annotation

kegg
ID pop:POPTR_0006s00980g
description POPTRDRAFT_818931; hypothetical protein
nr
ID XP_011002399.1
description PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A0B0MGH4
description Uncharacterized protein OS=Gossypium arboreum GN=F383_18216 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35266: 126172-127086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003368_070 0.0 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
2 Hb_001699_070 0.0576615847 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000176_040 0.0715706263 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
4 Hb_000890_140 0.0758628402 - - PREDICTED: uncharacterized protein LOC105646185 [Jatropha curcas]
5 Hb_002928_150 0.0788159575 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
6 Hb_001279_110 0.0809697896 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
7 Hb_119044_040 0.0810190634 - - cyclin B, putative [Ricinus communis]
8 Hb_003398_050 0.0813685883 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
9 Hb_000116_050 0.0827229758 - - PREDICTED: G2/mitotic-specific cyclin-2-like isoform X2 [Jatropha curcas]
10 Hb_000060_030 0.0835168299 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
11 Hb_080952_060 0.0835202127 - - PREDICTED: patellin-4 [Populus euphratica]
12 Hb_003776_050 0.0836291251 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
13 Hb_004097_030 0.0844170765 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
14 Hb_000035_190 0.085846044 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005914_100 0.0859609242 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003018_210 0.0870583382 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
17 Hb_007245_030 0.0874291687 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004631_040 0.0881792574 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
19 Hb_000856_390 0.0889322966 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000480_060 0.0901101723 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]

Gene co-expression network

sample Hb_003368_070 Hb_003368_070 Hb_001699_070 Hb_001699_070 Hb_003368_070--Hb_001699_070 Hb_000176_040 Hb_000176_040 Hb_003368_070--Hb_000176_040 Hb_000890_140 Hb_000890_140 Hb_003368_070--Hb_000890_140 Hb_002928_150 Hb_002928_150 Hb_003368_070--Hb_002928_150 Hb_001279_110 Hb_001279_110 Hb_003368_070--Hb_001279_110 Hb_119044_040 Hb_119044_040 Hb_003368_070--Hb_119044_040 Hb_001699_070--Hb_119044_040 Hb_003018_210 Hb_003018_210 Hb_001699_070--Hb_003018_210 Hb_003398_050 Hb_003398_050 Hb_001699_070--Hb_003398_050 Hb_003776_050 Hb_003776_050 Hb_001699_070--Hb_003776_050 Hb_000614_200 Hb_000614_200 Hb_001699_070--Hb_000614_200 Hb_004197_020 Hb_004197_020 Hb_000176_040--Hb_004197_020 Hb_004631_040 Hb_004631_040 Hb_000176_040--Hb_004631_040 Hb_004592_030 Hb_004592_030 Hb_000176_040--Hb_004592_030 Hb_074674_010 Hb_074674_010 Hb_000176_040--Hb_074674_010 Hb_001384_030 Hb_001384_030 Hb_000176_040--Hb_001384_030 Hb_000527_020 Hb_000527_020 Hb_000890_140--Hb_000527_020 Hb_000890_140--Hb_001699_070 Hb_000856_390 Hb_000856_390 Hb_000890_140--Hb_000856_390 Hb_007245_030 Hb_007245_030 Hb_000890_140--Hb_007245_030 Hb_034498_010 Hb_034498_010 Hb_000890_140--Hb_034498_010 Hb_002928_150--Hb_003398_050 Hb_002928_150--Hb_003776_050 Hb_005914_100 Hb_005914_100 Hb_002928_150--Hb_005914_100 Hb_004097_030 Hb_004097_030 Hb_002928_150--Hb_004097_030 Hb_001220_020 Hb_001220_020 Hb_002928_150--Hb_001220_020 Hb_004174_030 Hb_004174_030 Hb_002928_150--Hb_004174_030 Hb_000060_030 Hb_000060_030 Hb_001279_110--Hb_000060_030 Hb_000116_050 Hb_000116_050 Hb_001279_110--Hb_000116_050 Hb_001279_110--Hb_119044_040 Hb_012395_040 Hb_012395_040 Hb_001279_110--Hb_012395_040 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_119044_040--Hb_003776_050 Hb_000085_360 Hb_000085_360 Hb_119044_040--Hb_000085_360 Hb_119044_040--Hb_004631_040 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.214509 0.501887 68.9537 33.8801 0.111756 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.99641 1.59005

CAGE analysis