Hb_003371_030

Information

Type -
Description -
Location Contig3371: 10600-11262
Sequence    

Annotation

kegg
ID rcu:RCOM_1775920
description zinc finger protein, putative
nr
ID XP_012092596.1
description PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID A0A067JLJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05262 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35278: 11253-12815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_030 0.0 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
2 Hb_000139_460 0.0991031776 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
3 Hb_001006_300 0.1291183049 - - lipid binding protein, putative [Ricinus communis]
4 Hb_003858_070 0.1302946233 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
5 Hb_019299_020 0.1334103334 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
6 Hb_001296_010 0.1343425885 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013399_060 0.138174605 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
8 Hb_019053_050 0.1394601834 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_005144_150 0.1432362842 - - hypothetical protein VITISV_013572 [Vitis vinifera]
10 Hb_004617_010 0.1434657753 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
11 Hb_017061_010 0.1443485457 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
12 Hb_001157_120 0.146770711 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
13 Hb_010863_020 0.1485542471 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
14 Hb_000959_170 0.1491488567 - - Cell division protein kinase 7, putative [Ricinus communis]
15 Hb_007292_020 0.1497545907 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
16 Hb_001898_030 0.1498592346 - - protein kinase-coding resistance protein [Nicotiana repanda]
17 Hb_011344_050 0.1523548723 - - PREDICTED: 21 kDa protein [Jatropha curcas]
18 Hb_002277_020 0.1530608838 - - Uncharacterized protein TCM_002409 [Theobroma cacao]
19 Hb_159791_010 0.1536264913 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
20 Hb_000964_120 0.1556556298 - - DNA-damage-inducible protein f, putative [Ricinus communis]

Gene co-expression network

sample Hb_003371_030 Hb_003371_030 Hb_000139_460 Hb_000139_460 Hb_003371_030--Hb_000139_460 Hb_001006_300 Hb_001006_300 Hb_003371_030--Hb_001006_300 Hb_003858_070 Hb_003858_070 Hb_003371_030--Hb_003858_070 Hb_019299_020 Hb_019299_020 Hb_003371_030--Hb_019299_020 Hb_001296_010 Hb_001296_010 Hb_003371_030--Hb_001296_010 Hb_013399_060 Hb_013399_060 Hb_003371_030--Hb_013399_060 Hb_000139_460--Hb_019299_020 Hb_001091_040 Hb_001091_040 Hb_000139_460--Hb_001091_040 Hb_002304_110 Hb_002304_110 Hb_000139_460--Hb_002304_110 Hb_006351_040 Hb_006351_040 Hb_000139_460--Hb_006351_040 Hb_005144_150 Hb_005144_150 Hb_000139_460--Hb_005144_150 Hb_017061_010 Hb_017061_010 Hb_001006_300--Hb_017061_010 Hb_001006_300--Hb_003858_070 Hb_001898_030 Hb_001898_030 Hb_001006_300--Hb_001898_030 Hb_001006_300--Hb_013399_060 Hb_000964_120 Hb_000964_120 Hb_001006_300--Hb_000964_120 Hb_001006_300--Hb_005144_150 Hb_003858_070--Hb_017061_010 Hb_003858_070--Hb_005144_150 Hb_003858_070--Hb_013399_060 Hb_180088_010 Hb_180088_010 Hb_003858_070--Hb_180088_010 Hb_010863_020 Hb_010863_020 Hb_003858_070--Hb_010863_020 Hb_000740_080 Hb_000740_080 Hb_019299_020--Hb_000740_080 Hb_019299_020--Hb_002304_110 Hb_001257_140 Hb_001257_140 Hb_019299_020--Hb_001257_140 Hb_019299_020--Hb_010863_020 Hb_000352_360 Hb_000352_360 Hb_019299_020--Hb_000352_360 Hb_001296_010--Hb_010863_020 Hb_001296_010--Hb_013399_060 Hb_011344_050 Hb_011344_050 Hb_001296_010--Hb_011344_050 Hb_000991_060 Hb_000991_060 Hb_001296_010--Hb_000991_060 Hb_002030_190 Hb_002030_190 Hb_001296_010--Hb_002030_190 Hb_027411_030 Hb_027411_030 Hb_001296_010--Hb_027411_030 Hb_013399_060--Hb_010863_020 Hb_003598_050 Hb_003598_050 Hb_013399_060--Hb_003598_050 Hb_013399_060--Hb_180088_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.715065 1.16909 16.8915 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174658 0.274584 0 0.840013 0.943714

CAGE analysis