Hb_003371_070

Information

Type -
Description -
Location Contig3371: 25386-31414
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23760g
description Citrate synthase family protein
nr
ID XP_012092602.1
description PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
swissprot
ID P49298
description Citrate synthase, mitochondrial OS=Citrus maxima GN=CIT PE=2 SV=1
trembl
ID A0A067JCB3
description Citrate synthase OS=Jatropha curcas GN=JCGZ_05266 PE=3 SV=1
Gene Ontology
ID GO:0004108
description citrate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35282: 25412-31425 , PASA_asmbl_35284: 28069-28486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_070 0.0 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
2 Hb_002007_320 0.0902307105 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
3 Hb_000057_130 0.102267965 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
4 Hb_000110_060 0.1026911135 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
5 Hb_001619_060 0.1073650361 - - PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Jatropha curcas]
6 Hb_000023_310 0.1088346792 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
7 Hb_007537_030 0.109123103 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
8 Hb_000861_100 0.1129690257 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
9 Hb_002615_030 0.1160081886 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A-like [Populus euphratica]
10 Hb_001817_100 0.1179283926 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
11 Hb_000375_300 0.1194749795 - - PREDICTED: cyanate hydratase [Jatropha curcas]
12 Hb_000928_120 0.120204722 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
13 Hb_147245_010 0.1204622474 - - casein kinase, putative [Ricinus communis]
14 Hb_001369_630 0.1214976918 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
15 Hb_007590_090 0.1243003177 - - PREDICTED: O-glucosyltransferase rumi [Jatropha curcas]
16 Hb_000935_040 0.1260155198 - - Uncharacterized protein isoform 2 [Theobroma cacao]
17 Hb_132840_160 0.1282259341 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000570_020 0.1285713917 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
19 Hb_001998_200 0.1293953369 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
20 Hb_004109_050 0.1317379383 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_003371_070 Hb_003371_070 Hb_002007_320 Hb_002007_320 Hb_003371_070--Hb_002007_320 Hb_000057_130 Hb_000057_130 Hb_003371_070--Hb_000057_130 Hb_000110_060 Hb_000110_060 Hb_003371_070--Hb_000110_060 Hb_001619_060 Hb_001619_060 Hb_003371_070--Hb_001619_060 Hb_000023_310 Hb_000023_310 Hb_003371_070--Hb_000023_310 Hb_007537_030 Hb_007537_030 Hb_003371_070--Hb_007537_030 Hb_002193_060 Hb_002193_060 Hb_002007_320--Hb_002193_060 Hb_000375_300 Hb_000375_300 Hb_002007_320--Hb_000375_300 Hb_000935_040 Hb_000935_040 Hb_002007_320--Hb_000935_040 Hb_000012_080 Hb_000012_080 Hb_002007_320--Hb_000012_080 Hb_002007_320--Hb_000023_310 Hb_000861_100 Hb_000861_100 Hb_000057_130--Hb_000861_100 Hb_001754_050 Hb_001754_050 Hb_000057_130--Hb_001754_050 Hb_004129_010 Hb_004129_010 Hb_000057_130--Hb_004129_010 Hb_000339_020 Hb_000339_020 Hb_000057_130--Hb_000339_020 Hb_000922_320 Hb_000922_320 Hb_000057_130--Hb_000922_320 Hb_002615_030 Hb_002615_030 Hb_000110_060--Hb_002615_030 Hb_000849_120 Hb_000849_120 Hb_000110_060--Hb_000849_120 Hb_000110_060--Hb_001619_060 Hb_000181_460 Hb_000181_460 Hb_000110_060--Hb_000181_460 Hb_021943_090 Hb_021943_090 Hb_000110_060--Hb_021943_090 Hb_001619_060--Hb_000375_300 Hb_000049_160 Hb_000049_160 Hb_001619_060--Hb_000049_160 Hb_029920_060 Hb_029920_060 Hb_001619_060--Hb_029920_060 Hb_001301_280 Hb_001301_280 Hb_001619_060--Hb_001301_280 Hb_001619_060--Hb_002193_060 Hb_185830_060 Hb_185830_060 Hb_001619_060--Hb_185830_060 Hb_000023_310--Hb_002615_030 Hb_001817_100 Hb_001817_100 Hb_000023_310--Hb_001817_100 Hb_004158_020 Hb_004158_020 Hb_000023_310--Hb_004158_020 Hb_007590_090 Hb_007590_090 Hb_000023_310--Hb_007590_090 Hb_000570_020 Hb_000570_020 Hb_007537_030--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_007537_030--Hb_000157_140 Hb_004030_060 Hb_004030_060 Hb_007537_030--Hb_004030_060 Hb_018845_010 Hb_018845_010 Hb_007537_030--Hb_018845_010 Hb_021576_070 Hb_021576_070 Hb_007537_030--Hb_021576_070 Hb_004326_010 Hb_004326_010 Hb_007537_030--Hb_004326_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.89045 12.2994 22.9545 41.0259 0.878574 2.83586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.38343 10.2978 9.23542 15.2817 22.779

CAGE analysis