Hb_003371_080

Information

Type -
Description -
Location Contig3371: 33196-34158
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23660g
description hypothetical protein
nr
ID XP_006369462.1
description hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
swissprot
ID O80763
description Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1
trembl
ID B9N6I0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s23660g PE=4 SV=1
Gene Ontology
ID GO:0047134
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35285: 33847-34184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_080 0.0 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
2 Hb_008225_050 0.0658740018 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
3 Hb_007537_040 0.0703983351 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
4 Hb_004970_060 0.0715059201 - - PREDICTED: uncharacterized protein LOC100259061 [Vitis vinifera]
5 Hb_002702_010 0.0801611198 - - carbohydrate binding protein, putative [Ricinus communis]
6 Hb_008195_070 0.0840736305 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_000254_130 0.0860874038 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
8 Hb_007597_030 0.087208578 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_003623_080 0.0872890376 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
10 Hb_003025_160 0.0880785965 - - Protein HVA22, putative [Ricinus communis]
11 Hb_000300_110 0.0914948287 - - hypothetical protein JCGZ_02651 [Jatropha curcas]
12 Hb_000511_030 0.0931944879 - - PREDICTED: uncharacterized protein LOC105636463 [Jatropha curcas]
13 Hb_000152_350 0.0939008481 - - PREDICTED: enolase [Jatropha curcas]
14 Hb_156093_010 0.0940536337 - - hypothetical protein RCOM_0504250 [Ricinus communis]
15 Hb_001735_040 0.0940733895 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
16 Hb_004338_050 0.0956563227 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
17 Hb_001946_120 0.09578754 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
18 Hb_002272_210 0.0958550446 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
19 Hb_002028_020 0.0962184226 - - acyltransferase, putative [Ricinus communis]
20 Hb_000369_110 0.0973137655 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003371_080 Hb_003371_080 Hb_008225_050 Hb_008225_050 Hb_003371_080--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_003371_080--Hb_007537_040 Hb_004970_060 Hb_004970_060 Hb_003371_080--Hb_004970_060 Hb_002702_010 Hb_002702_010 Hb_003371_080--Hb_002702_010 Hb_008195_070 Hb_008195_070 Hb_003371_080--Hb_008195_070 Hb_000254_130 Hb_000254_130 Hb_003371_080--Hb_000254_130 Hb_008225_050--Hb_007537_040 Hb_008225_050--Hb_000254_130 Hb_003025_160 Hb_003025_160 Hb_008225_050--Hb_003025_160 Hb_002752_020 Hb_002752_020 Hb_008225_050--Hb_002752_020 Hb_008225_050--Hb_004970_060 Hb_001975_100 Hb_001975_100 Hb_008225_050--Hb_001975_100 Hb_000369_110 Hb_000369_110 Hb_007537_040--Hb_000369_110 Hb_007537_040--Hb_003025_160 Hb_007537_040--Hb_004970_060 Hb_001735_040 Hb_001735_040 Hb_007537_040--Hb_001735_040 Hb_007537_040--Hb_002752_020 Hb_004970_060--Hb_003025_160 Hb_004970_060--Hb_000254_130 Hb_001999_230 Hb_001999_230 Hb_004970_060--Hb_001999_230 Hb_153258_040 Hb_153258_040 Hb_004970_060--Hb_153258_040 Hb_012395_090 Hb_012395_090 Hb_002702_010--Hb_012395_090 Hb_011013_040 Hb_011013_040 Hb_002702_010--Hb_011013_040 Hb_004223_150 Hb_004223_150 Hb_002702_010--Hb_004223_150 Hb_000046_120 Hb_000046_120 Hb_002702_010--Hb_000046_120 Hb_001942_010 Hb_001942_010 Hb_002702_010--Hb_001942_010 Hb_002375_030 Hb_002375_030 Hb_008195_070--Hb_002375_030 Hb_146225_020 Hb_146225_020 Hb_008195_070--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_008195_070--Hb_000719_030 Hb_013726_060 Hb_013726_060 Hb_008195_070--Hb_013726_060 Hb_002121_050 Hb_002121_050 Hb_008195_070--Hb_002121_050 Hb_000230_420 Hb_000230_420 Hb_008195_070--Hb_000230_420 Hb_000254_130--Hb_001975_100 Hb_000254_130--Hb_001999_230 Hb_000254_130--Hb_003025_160 Hb_005063_030 Hb_005063_030 Hb_000254_130--Hb_005063_030 Hb_000254_130--Hb_002752_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.185839 2.48714 1.45385 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0531242 0 0 0.117724 3.32417

CAGE analysis