Hb_003371_090

Information

Type -
Description -
Location Contig3371: 35918-37321
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23670g
description hypothetical protein
nr
ID XP_012092608.1
description PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
swissprot
ID P93030
description E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2 PE=1 SV=1
trembl
ID A0A067J9G1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05270 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase rnf168

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_090 0.0 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
2 Hb_000041_100 0.0463726004 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
3 Hb_000213_100 0.0626079152 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Jatropha curcas]
4 Hb_007508_090 0.0670862246 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
5 Hb_002450_020 0.0681132769 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
6 Hb_000710_060 0.0694486836 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
7 Hb_000297_010 0.0706838577 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
8 Hb_002110_150 0.0709506701 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
9 Hb_007532_030 0.0726215967 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
10 Hb_000230_500 0.0731253799 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
11 Hb_005463_100 0.0752518276 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
12 Hb_001959_190 0.0753262948 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
13 Hb_001014_030 0.0758580017 - - ATP binding protein, putative [Ricinus communis]
14 Hb_008725_260 0.0770337755 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
15 Hb_000866_220 0.0789301824 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
16 Hb_004374_070 0.0789495953 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
17 Hb_002046_180 0.0801721556 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
18 Hb_007441_220 0.080566806 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
19 Hb_000230_390 0.0808628773 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
20 Hb_001633_210 0.0823594329 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003371_090 Hb_003371_090 Hb_000041_100 Hb_000041_100 Hb_003371_090--Hb_000041_100 Hb_000213_100 Hb_000213_100 Hb_003371_090--Hb_000213_100 Hb_007508_090 Hb_007508_090 Hb_003371_090--Hb_007508_090 Hb_002450_020 Hb_002450_020 Hb_003371_090--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_003371_090--Hb_000710_060 Hb_000297_010 Hb_000297_010 Hb_003371_090--Hb_000297_010 Hb_000041_100--Hb_002450_020 Hb_000041_100--Hb_000297_010 Hb_007441_220 Hb_007441_220 Hb_000041_100--Hb_007441_220 Hb_000230_500 Hb_000230_500 Hb_000041_100--Hb_000230_500 Hb_011386_010 Hb_011386_010 Hb_000041_100--Hb_011386_010 Hb_022250_090 Hb_022250_090 Hb_000213_100--Hb_022250_090 Hb_002218_010 Hb_002218_010 Hb_000213_100--Hb_002218_010 Hb_000206_240 Hb_000206_240 Hb_000213_100--Hb_000206_240 Hb_007532_030 Hb_007532_030 Hb_000213_100--Hb_007532_030 Hb_000213_100--Hb_007508_090 Hb_000230_390 Hb_000230_390 Hb_007508_090--Hb_000230_390 Hb_007508_090--Hb_007532_030 Hb_007508_090--Hb_000710_060 Hb_000189_560 Hb_000189_560 Hb_007508_090--Hb_000189_560 Hb_002450_020--Hb_011386_010 Hb_002450_020--Hb_000297_010 Hb_005054_110 Hb_005054_110 Hb_002450_020--Hb_005054_110 Hb_015934_040 Hb_015934_040 Hb_002450_020--Hb_015934_040 Hb_001014_030 Hb_001014_030 Hb_002450_020--Hb_001014_030 Hb_000185_030 Hb_000185_030 Hb_000710_060--Hb_000185_030 Hb_000049_210 Hb_000049_210 Hb_000710_060--Hb_000049_210 Hb_008770_030 Hb_008770_030 Hb_000710_060--Hb_008770_030 Hb_001633_210 Hb_001633_210 Hb_000710_060--Hb_001633_210 Hb_000710_060--Hb_000297_010 Hb_001205_240 Hb_001205_240 Hb_000710_060--Hb_001205_240 Hb_000297_010--Hb_000185_030 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000840_250 Hb_000840_250 Hb_000297_010--Hb_000840_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0889 14.179 5.15529 7.97506 7.24311 9.43369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5299 13.0753 19.0342 8.99647 9.73726

CAGE analysis