Hb_003371_100

Information

Type transcription factor
Description TF Family: HB
Location Contig3371: 46412-48324
Sequence    

Annotation

kegg
ID rcu:RCOM_1773230
description homeobox protein, putative
nr
ID XP_002512174.1
description homeobox protein, putative [Ricinus communis]
swissprot
ID P46665
description Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3
trembl
ID B9REK5
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_1773230 PE=4 SV=1
Gene Ontology
ID GO:0003700
description homeobox-leucine zipper protein hox11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35287: 46401-48350 , PASA_asmbl_35288: 46401-48350 , PASA_asmbl_35289: 46451-48350
cDNA
(Sanger)
(ID:Location)		 005_N08.ab1: 46401-47411

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_100 0.0 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
2 Hb_001507_070 0.0981200027 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005000_160 0.1001812713 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
4 Hb_011004_010 0.104854479 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
5 Hb_000260_580 0.1144705996 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000742_270 0.1146986841 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
7 Hb_000175_610 0.121278127 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
8 Hb_148121_010 0.1350487147 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001213_120 0.1358646412 - - PREDICTED: immediate early response 3-interacting protein 1-like [Brassica rapa]
10 Hb_000032_040 0.1382421471 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
11 Hb_001268_080 0.140501728 - - catalytic, putative [Ricinus communis]
12 Hb_011671_400 0.1474455218 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
13 Hb_000788_080 0.1500171088 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
14 Hb_002027_400 0.153950918 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
15 Hb_000215_180 0.1540675513 - - hypothetical protein 17 [Hevea brasiliensis]
16 Hb_001278_050 0.1547678377 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
17 Hb_024714_060 0.1561986624 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
18 Hb_000784_030 0.1571750925 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
19 Hb_001785_040 0.1578406644 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
20 Hb_000922_100 0.1580237322 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]

Gene co-expression network

sample Hb_003371_100 Hb_003371_100 Hb_001507_070 Hb_001507_070 Hb_003371_100--Hb_001507_070 Hb_005000_160 Hb_005000_160 Hb_003371_100--Hb_005000_160 Hb_011004_010 Hb_011004_010 Hb_003371_100--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_003371_100--Hb_000260_580 Hb_000742_270 Hb_000742_270 Hb_003371_100--Hb_000742_270 Hb_000175_610 Hb_000175_610 Hb_003371_100--Hb_000175_610 Hb_001507_070--Hb_000742_270 Hb_001507_070--Hb_011004_010 Hb_148121_010 Hb_148121_010 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_000032_040 Hb_000032_040 Hb_001507_070--Hb_000032_040 Hb_001276_060 Hb_001276_060 Hb_005000_160--Hb_001276_060 Hb_000788_080 Hb_000788_080 Hb_005000_160--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_005000_160--Hb_009838_040 Hb_011671_400 Hb_011671_400 Hb_005000_160--Hb_011671_400 Hb_000613_160 Hb_000613_160 Hb_005000_160--Hb_000613_160 Hb_011004_010--Hb_000032_040 Hb_000575_020 Hb_000575_020 Hb_011004_010--Hb_000575_020 Hb_011004_010--Hb_000742_270 Hb_011004_010--Hb_000175_610 Hb_000260_580--Hb_000175_610 Hb_029243_040 Hb_029243_040 Hb_000260_580--Hb_029243_040 Hb_000260_580--Hb_001507_070 Hb_000260_580--Hb_000742_270 Hb_000260_580--Hb_011004_010 Hb_000742_270--Hb_148121_010 Hb_000742_270--Hb_000032_040 Hb_001268_080 Hb_001268_080 Hb_000742_270--Hb_001268_080 Hb_024714_060 Hb_024714_060 Hb_000742_270--Hb_024714_060 Hb_000175_610--Hb_000742_270 Hb_000175_610--Hb_001507_070 Hb_000175_610--Hb_148121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9024 12.3823 3.99912 7.20454 12.223 11.9744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.799 103.567 98.2766 8.35356 4.92248

CAGE analysis