Hb_003371_110

Information

Type -
Description -
Location Contig3371: 65241-75880
Sequence    

Annotation

kegg
ID rcu:RCOM_1771670
description hypothetical protein
nr
ID XP_012092617.1
description PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
swissprot
ID Q08A72
description Protein EMSY-LIKE 4 OS=Arabidopsis thaliana GN=EML4 PE=2 SV=1
trembl
ID A0A067JCC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05276 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35290: 64709-72671 , PASA_asmbl_35291: 64709-72716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_110 0.0 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
2 Hb_014361_070 0.0479991425 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
3 Hb_001195_320 0.0515174897 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
4 Hb_000166_130 0.0539276758 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002823_030 0.0548783282 - - -
6 Hb_000190_120 0.0561576589 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
7 Hb_004935_030 0.0584341163 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
8 Hb_006882_020 0.0594006945 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000264_030 0.0597671003 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
10 Hb_000170_150 0.061958989 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
11 Hb_003029_110 0.062242846 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
12 Hb_003362_070 0.0622763078 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
13 Hb_007576_110 0.063145291 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
14 Hb_000289_040 0.0636440487 - - Poly(A) polymerase alpha, putative [Ricinus communis]
15 Hb_002174_020 0.0639020724 - - ring finger protein, putative [Ricinus communis]
16 Hb_000914_120 0.0654626359 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
17 Hb_003680_150 0.065928258 - - srpk, putative [Ricinus communis]
18 Hb_010222_050 0.0670795176 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
19 Hb_007943_110 0.0679530851 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
20 Hb_000200_380 0.0683968667 - - PREDICTED: uncharacterized protein LOC105636933 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003371_110 Hb_003371_110 Hb_014361_070 Hb_014361_070 Hb_003371_110--Hb_014361_070 Hb_001195_320 Hb_001195_320 Hb_003371_110--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_003371_110--Hb_000166_130 Hb_002823_030 Hb_002823_030 Hb_003371_110--Hb_002823_030 Hb_000190_120 Hb_000190_120 Hb_003371_110--Hb_000190_120 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_007576_110 Hb_007576_110 Hb_014361_070--Hb_007576_110 Hb_000289_040 Hb_000289_040 Hb_014361_070--Hb_000289_040 Hb_014361_070--Hb_002823_030 Hb_014361_070--Hb_001195_320 Hb_001195_320--Hb_000166_130 Hb_002329_040 Hb_002329_040 Hb_001195_320--Hb_002329_040 Hb_003029_110 Hb_003029_110 Hb_001195_320--Hb_003029_110 Hb_000183_020 Hb_000183_020 Hb_001195_320--Hb_000183_020 Hb_000166_130--Hb_003029_110 Hb_000343_120 Hb_000343_120 Hb_000166_130--Hb_000343_120 Hb_000035_290 Hb_000035_290 Hb_000166_130--Hb_000035_290 Hb_001199_100 Hb_001199_100 Hb_000166_130--Hb_001199_100 Hb_003680_150 Hb_003680_150 Hb_002823_030--Hb_003680_150 Hb_002823_030--Hb_000190_120 Hb_002835_230 Hb_002835_230 Hb_002823_030--Hb_002835_230 Hb_003018_130 Hb_003018_130 Hb_002823_030--Hb_003018_130 Hb_000190_120--Hb_007576_110 Hb_000347_070 Hb_000347_070 Hb_000190_120--Hb_000347_070 Hb_009175_020 Hb_009175_020 Hb_000190_120--Hb_009175_020 Hb_000190_120--Hb_003680_150 Hb_003362_070 Hb_003362_070 Hb_004935_030--Hb_003362_070 Hb_000083_160 Hb_000083_160 Hb_004935_030--Hb_000083_160 Hb_000457_260 Hb_000457_260 Hb_004935_030--Hb_000457_260 Hb_001617_060 Hb_001617_060 Hb_004935_030--Hb_001617_060 Hb_004935_030--Hb_007576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8915 16.7334 9.61566 11.0109 16.2699 20.3617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.966 9.67466 9.3221 11.039 12.0163

CAGE analysis