Hb_003371_210

Information

Type -
Description -
Location Contig3371: 116158-144562
Sequence    

Annotation

kegg
ID rcu:RCOM_1769070
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID CBI16442.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q5Z9Z0
description Beta-glucosidase 24 OS=Oryza sativa subsp. japonica GN=BGLU24 PE=2 SV=1
trembl
ID F6GUD2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g01430 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35300: 122657-125280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_210 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_003371_260 0.1101873214 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
3 Hb_064047_010 0.1457755611 - - conserved hypothetical protein [Ricinus communis]
4 Hb_066320_010 0.1468867886 - - hypothetical protein VITISV_027639 [Vitis vinifera]
5 Hb_010381_110 0.1510888524 - - PRA1 family protein [Theobroma cacao]
6 Hb_001791_010 0.1516159581 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
7 Hb_169620_010 0.1601043526 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
8 Hb_000808_160 0.1660184331 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
9 Hb_004282_040 0.1662236081 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
10 Hb_001699_050 0.167523221 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
11 Hb_000544_020 0.1682422713 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
12 Hb_062479_010 0.1702889562 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
13 Hb_001934_010 0.1708182884 - - o-methyltransferase, putative [Ricinus communis]
14 Hb_000431_030 0.1720478239 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
15 Hb_004032_250 0.1723743436 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000723_060 0.1750987008 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
17 Hb_002239_030 0.1760930394 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
18 Hb_158696_010 0.1782293238 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
19 Hb_009510_050 0.1791737258 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002571_010 0.1836812251 - - cationic amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_003371_210 Hb_003371_210 Hb_003371_260 Hb_003371_260 Hb_003371_210--Hb_003371_260 Hb_064047_010 Hb_064047_010 Hb_003371_210--Hb_064047_010 Hb_066320_010 Hb_066320_010 Hb_003371_210--Hb_066320_010 Hb_010381_110 Hb_010381_110 Hb_003371_210--Hb_010381_110 Hb_001791_010 Hb_001791_010 Hb_003371_210--Hb_001791_010 Hb_169620_010 Hb_169620_010 Hb_003371_210--Hb_169620_010 Hb_003371_260--Hb_066320_010 Hb_000431_030 Hb_000431_030 Hb_003371_260--Hb_000431_030 Hb_002239_030 Hb_002239_030 Hb_003371_260--Hb_002239_030 Hb_003371_260--Hb_010381_110 Hb_014361_130 Hb_014361_130 Hb_003371_260--Hb_014361_130 Hb_000816_050 Hb_000816_050 Hb_064047_010--Hb_000816_050 Hb_005784_020 Hb_005784_020 Hb_064047_010--Hb_005784_020 Hb_002431_090 Hb_002431_090 Hb_064047_010--Hb_002431_090 Hb_002324_040 Hb_002324_040 Hb_064047_010--Hb_002324_040 Hb_064047_010--Hb_010381_110 Hb_000976_340 Hb_000976_340 Hb_064047_010--Hb_000976_340 Hb_066320_010--Hb_014361_130 Hb_066320_010--Hb_169620_010 Hb_000101_140 Hb_000101_140 Hb_066320_010--Hb_000101_140 Hb_017604_020 Hb_017604_020 Hb_066320_010--Hb_017604_020 Hb_001148_040 Hb_001148_040 Hb_010381_110--Hb_001148_040 Hb_005695_020 Hb_005695_020 Hb_010381_110--Hb_005695_020 Hb_001259_100 Hb_001259_100 Hb_010381_110--Hb_001259_100 Hb_004032_250 Hb_004032_250 Hb_010381_110--Hb_004032_250 Hb_001195_500 Hb_001195_500 Hb_001791_010--Hb_001195_500 Hb_098160_010 Hb_098160_010 Hb_001791_010--Hb_098160_010 Hb_009510_050 Hb_009510_050 Hb_001791_010--Hb_009510_050 Hb_000808_160 Hb_000808_160 Hb_001791_010--Hb_000808_160 Hb_001791_010--Hb_004032_250 Hb_004648_100 Hb_004648_100 Hb_169620_010--Hb_004648_100 Hb_060909_010 Hb_060909_010 Hb_169620_010--Hb_060909_010 Hb_163658_010 Hb_163658_010 Hb_169620_010--Hb_163658_010 Hb_000544_020 Hb_000544_020 Hb_169620_010--Hb_000544_020 Hb_001408_150 Hb_001408_150 Hb_169620_010--Hb_001408_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203564 8.92528 1.02775 5.95285 0.143785 1.10443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.202724 0.0626787 0.0109867 2.43409 1.21406

CAGE analysis