Hb_003371_240

Information

Type -
Description -
Location Contig3371: 188796-189686
Sequence    

Annotation

kegg
ID pop:POPTR_0001s02900g
description GMFP4 family protein
nr
ID KDP43415.1
description hypothetical protein JCGZ_16702 [Jatropha curcas]
swissprot
ID Q9C5W7
description Tobamovirus multiplication protein 2A OS=Arabidopsis thaliana GN=TOM2A PE=1 SV=1
trembl
ID A0A067LFW2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16702 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tobamovirus multiplication protein 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_240 0.0 - - hypothetical protein JCGZ_16702 [Jatropha curcas]
2 Hb_032299_050 0.2211682496 - - -
3 Hb_094245_010 0.3029493792 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
4 Hb_011037_010 0.3223357783 - - PREDICTED: uncharacterized protein LOC105778976 [Gossypium raimondii]
5 Hb_003058_050 0.3223539275 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_002099_020 0.3223887701 - - cysteine proteinase inhibitor-like [Jatropha curcas]
7 Hb_000205_170 0.3263133112 - - PREDICTED: uncharacterized protein LOC103926801 [Pyrus x bretschneideri]
8 Hb_092027_010 0.3339157787 - - PREDICTED: uncharacterized protein LOC105761643 [Gossypium raimondii]
9 Hb_076693_010 0.3340666576 - - PREDICTED: beta-glucosidase 11-like isoform X2 [Jatropha curcas]
10 Hb_011707_010 0.3341147904 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_008031_020 0.3467418874 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_001831_020 0.3469197589 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
13 Hb_000058_220 0.3472568374 - - hypothetical protein, partial [Staphylococcus aureus]
14 Hb_019677_010 0.3473706639 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_048125_010 0.3485801341 - - PREDICTED: uncharacterized protein LOC104104928 [Nicotiana tomentosiformis]
16 Hb_001135_230 0.3489763571 - - PREDICTED: protein REVEILLE 6-like isoform X3 [Gossypium raimondii]
17 Hb_012522_020 0.3495693086 - - -
18 Hb_007713_020 0.3740324299 - - -
19 Hb_000836_200 0.383927999 - - -
20 Hb_007181_040 0.3890711665 - - -

Gene co-expression network

sample Hb_003371_240 Hb_003371_240 Hb_032299_050 Hb_032299_050 Hb_003371_240--Hb_032299_050 Hb_094245_010 Hb_094245_010 Hb_003371_240--Hb_094245_010 Hb_011037_010 Hb_011037_010 Hb_003371_240--Hb_011037_010 Hb_003058_050 Hb_003058_050 Hb_003371_240--Hb_003058_050 Hb_002099_020 Hb_002099_020 Hb_003371_240--Hb_002099_020 Hb_000205_170 Hb_000205_170 Hb_003371_240--Hb_000205_170 Hb_000836_200 Hb_000836_200 Hb_032299_050--Hb_000836_200 Hb_003861_130 Hb_003861_130 Hb_032299_050--Hb_003861_130 Hb_001623_030 Hb_001623_030 Hb_032299_050--Hb_001623_030 Hb_004102_120 Hb_004102_120 Hb_032299_050--Hb_004102_120 Hb_032299_050--Hb_094245_010 Hb_082730_010 Hb_082730_010 Hb_094245_010--Hb_082730_010 Hb_004297_060 Hb_004297_060 Hb_094245_010--Hb_004297_060 Hb_148908_020 Hb_148908_020 Hb_094245_010--Hb_148908_020 Hb_000608_130 Hb_000608_130 Hb_094245_010--Hb_000608_130 Hb_011037_010--Hb_003058_050 Hb_011037_010--Hb_002099_020 Hb_011037_010--Hb_000205_170 Hb_092027_010 Hb_092027_010 Hb_011037_010--Hb_092027_010 Hb_076693_010 Hb_076693_010 Hb_011037_010--Hb_076693_010 Hb_011707_010 Hb_011707_010 Hb_011037_010--Hb_011707_010 Hb_003058_050--Hb_002099_020 Hb_003058_050--Hb_000205_170 Hb_003058_050--Hb_092027_010 Hb_003058_050--Hb_076693_010 Hb_003058_050--Hb_011707_010 Hb_002099_020--Hb_000205_170 Hb_002099_020--Hb_092027_010 Hb_002099_020--Hb_076693_010 Hb_002099_020--Hb_011707_010 Hb_001135_230 Hb_001135_230 Hb_000205_170--Hb_001135_230 Hb_000205_170--Hb_092027_010 Hb_000205_170--Hb_076693_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116508 0.0604507 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136454 0 0 0 0

CAGE analysis