Hb_003371_280

Information

Type -
Description -
Location Contig3371: 230811-246127
Sequence    

Annotation

kegg
ID rcu:RCOM_0827440
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID CBI24830.3
description unnamed protein product [Vitis vinifera]
swissprot
ID O64882
description Beta-glucosidase 17 OS=Arabidopsis thaliana GN=BGLU17 PE=2 SV=1
trembl
ID A0A0D9W665
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_280 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000620_050 0.0863936524 - - PREDICTED: uncharacterized protein LOC105649924 [Jatropha curcas]
3 Hb_184074_010 0.0916258177 - - PREDICTED: uncharacterized protein LOC105639054 [Jatropha curcas]
4 Hb_002370_020 0.0975625383 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
5 Hb_002374_510 0.1046670364 - - Esterase precursor, putative [Ricinus communis]
6 Hb_000866_400 0.1115065542 - - -
7 Hb_011519_040 0.1163030835 - - hypothetical protein POPTR_0015s04770g [Populus trichocarpa]
8 Hb_001268_290 0.1251954443 - - PREDICTED: glutaredoxin-C1-like [Jatropha curcas]
9 Hb_025623_010 0.1345447339 - - -
10 Hb_149507_010 0.1345570798 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
11 Hb_006755_030 0.1353802106 - - BURP domain-containing protein, putative [Theobroma cacao]
12 Hb_031579_010 0.1358391748 - - JHL22C18.10 [Jatropha curcas]
13 Hb_022973_010 0.1391260292 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Jatropha curcas]
14 Hb_002925_060 0.1394235014 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01547 [Jatropha curcas]
15 Hb_090390_010 0.1418403923 - - hypothetical protein POPTR_0006s28850g [Populus trichocarpa]
16 Hb_001410_080 0.1421479491 - - ring finger protein, putative [Ricinus communis]
17 Hb_113766_010 0.1425305381 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
18 Hb_000959_110 0.1426584762 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 13 [Vitis vinifera]
19 Hb_000377_130 0.1438615349 - - hypothetical protein POPTR_0016s00790g [Populus trichocarpa]
20 Hb_091236_010 0.1445374033 - - hypothetical protein POPTR_0019s12290g [Populus trichocarpa]

Gene co-expression network

sample Hb_003371_280 Hb_003371_280 Hb_000620_050 Hb_000620_050 Hb_003371_280--Hb_000620_050 Hb_184074_010 Hb_184074_010 Hb_003371_280--Hb_184074_010 Hb_002370_020 Hb_002370_020 Hb_003371_280--Hb_002370_020 Hb_002374_510 Hb_002374_510 Hb_003371_280--Hb_002374_510 Hb_000866_400 Hb_000866_400 Hb_003371_280--Hb_000866_400 Hb_011519_040 Hb_011519_040 Hb_003371_280--Hb_011519_040 Hb_002925_060 Hb_002925_060 Hb_000620_050--Hb_002925_060 Hb_000620_050--Hb_184074_010 Hb_182869_010 Hb_182869_010 Hb_000620_050--Hb_182869_010 Hb_003058_240 Hb_003058_240 Hb_000620_050--Hb_003058_240 Hb_000620_050--Hb_011519_040 Hb_000334_030 Hb_000334_030 Hb_184074_010--Hb_000334_030 Hb_000959_110 Hb_000959_110 Hb_184074_010--Hb_000959_110 Hb_004930_020 Hb_004930_020 Hb_184074_010--Hb_004930_020 Hb_006755_030 Hb_006755_030 Hb_184074_010--Hb_006755_030 Hb_002370_020--Hb_000866_400 Hb_149507_010 Hb_149507_010 Hb_002370_020--Hb_149507_010 Hb_025623_010 Hb_025623_010 Hb_002370_020--Hb_025623_010 Hb_001269_660 Hb_001269_660 Hb_002370_020--Hb_001269_660 Hb_002370_020--Hb_002374_510 Hb_009122_010 Hb_009122_010 Hb_002374_510--Hb_009122_010 Hb_113766_010 Hb_113766_010 Hb_002374_510--Hb_113766_010 Hb_002374_510--Hb_001269_660 Hb_012395_060 Hb_012395_060 Hb_002374_510--Hb_012395_060 Hb_000866_400--Hb_025623_010 Hb_011501_020 Hb_011501_020 Hb_000866_400--Hb_011501_020 Hb_000866_400--Hb_000620_050 Hb_031579_010 Hb_031579_010 Hb_000866_400--Hb_031579_010 Hb_000866_400--Hb_149507_010 Hb_000377_130 Hb_000377_130 Hb_011519_040--Hb_000377_130 Hb_186765_010 Hb_186765_010 Hb_011519_040--Hb_186765_010 Hb_011519_040--Hb_006755_030 Hb_091236_010 Hb_091236_010 Hb_011519_040--Hb_091236_010 Hb_001408_200 Hb_001408_200 Hb_011519_040--Hb_001408_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00862505 0.0359225 0.422341 0 0.00457816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0778165 0.28022

CAGE analysis