Hb_003375_050

Information

Type -
Description -
Location Contig3375: 86709-92730
Sequence    

Annotation

kegg
ID tcc:TCM_018243
description DNA/RNA polymerases superfamily protein
nr
ID XP_007032400.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061EEG7
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003375_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_005154_090 0.1562127801 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_034197_020 0.1677435153 - - hypothetical protein VITISV_041099 [Vitis vinifera]
4 Hb_041813_050 0.1681582396 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
5 Hb_002482_050 0.1842378828 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
6 Hb_062192_060 0.1865534229 - - maturase (mitochondrion) [Hevea brasiliensis]
7 Hb_151401_010 0.2105752983 - - -
8 Hb_000567_270 0.2156325671 - - hypothetical protein L484_017162 [Morus notabilis]
9 Hb_001981_020 0.2233753272 - - PREDICTED: xanthine dehydrogenase 1-like isoform X1 [Populus euphratica]
10 Hb_088080_030 0.2244850853 - - ribosomal protein S4 [Hevea brasiliensis]
11 Hb_003311_020 0.2245688266 - - conserved hypothetical protein [Ricinus communis]
12 Hb_019654_170 0.225090649 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
13 Hb_007533_050 0.2300143495 - - -
14 Hb_006111_040 0.2301625542 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
15 Hb_005920_030 0.2303509935 - - putative polyprotein [Oryza sativa Japonica Group]
16 Hb_003362_020 0.231385187 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
17 Hb_049285_010 0.2321141544 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
18 Hb_154726_010 0.232233366 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_035651_010 0.2328892405 - - receptor-kinase, putative [Ricinus communis]
20 Hb_000644_020 0.2335612007 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]

Gene co-expression network

sample Hb_003375_050 Hb_003375_050 Hb_005154_090 Hb_005154_090 Hb_003375_050--Hb_005154_090 Hb_034197_020 Hb_034197_020 Hb_003375_050--Hb_034197_020 Hb_041813_050 Hb_041813_050 Hb_003375_050--Hb_041813_050 Hb_002482_050 Hb_002482_050 Hb_003375_050--Hb_002482_050 Hb_062192_060 Hb_062192_060 Hb_003375_050--Hb_062192_060 Hb_151401_010 Hb_151401_010 Hb_003375_050--Hb_151401_010 Hb_041813_060 Hb_041813_060 Hb_005154_090--Hb_041813_060 Hb_005154_090--Hb_062192_060 Hb_005154_090--Hb_041813_050 Hb_062192_030 Hb_062192_030 Hb_005154_090--Hb_062192_030 Hb_041813_040 Hb_041813_040 Hb_005154_090--Hb_041813_040 Hb_034197_020--Hb_002482_050 Hb_000803_230 Hb_000803_230 Hb_034197_020--Hb_000803_230 Hb_005920_030 Hb_005920_030 Hb_034197_020--Hb_005920_030 Hb_000567_270 Hb_000567_270 Hb_034197_020--Hb_000567_270 Hb_003311_020 Hb_003311_020 Hb_034197_020--Hb_003311_020 Hb_041813_050--Hb_062192_060 Hb_041813_010 Hb_041813_010 Hb_041813_050--Hb_041813_010 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_002482_050--Hb_062192_060 Hb_013420_090 Hb_013420_090 Hb_002482_050--Hb_013420_090 Hb_006040_050 Hb_006040_050 Hb_002482_050--Hb_006040_050 Hb_027357_010 Hb_027357_010 Hb_002482_050--Hb_027357_010 Hb_002687_070 Hb_002687_070 Hb_002482_050--Hb_002687_070 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_000432_020 Hb_000432_020 Hb_151401_010--Hb_000432_020 Hb_007533_050 Hb_007533_050 Hb_151401_010--Hb_007533_050 Hb_144838_010 Hb_144838_010 Hb_151401_010--Hb_144838_010 Hb_003414_040 Hb_003414_040 Hb_151401_010--Hb_003414_040 Hb_151401_010--Hb_003311_020 Hb_093388_010 Hb_093388_010 Hb_151401_010--Hb_093388_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0190733 0.00530758 0.0240213 0.00681454 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0154422 0 0.0232216 0.0723208 0.362572

CAGE analysis