Hb_003375_070

Information

Type -
Description -
Location Contig3375: 107672-114600
Sequence    

Annotation

kegg
ID rcu:RCOM_0867260
description nucleic acid binding protein, putative
nr
ID XP_012083877.1
description PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
swissprot
ID Q07G10
description Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis GN=alkbh8 PE=2 SV=2
trembl
ID A0A067K722
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19468 PE=4 SV=1
Gene Ontology
ID GO:0000166
description alkylated dna repair protein alkb homolog 8 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35312: 110806-114139 , PASA_asmbl_35313: 114175-114567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003375_070 0.0 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
2 Hb_001135_220 0.0549158201 - - FGFR1 oncogene partner, putative [Ricinus communis]
3 Hb_000139_370 0.0653897181 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
4 Hb_011930_160 0.0689020301 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
5 Hb_002273_120 0.0693403857 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
6 Hb_003025_110 0.0714134486 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
7 Hb_007632_240 0.0720347095 - - transporter, putative [Ricinus communis]
8 Hb_005098_010 0.0723684879 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
9 Hb_003847_130 0.0733474205 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
10 Hb_001946_010 0.0750202506 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_000193_190 0.0764316678 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
12 Hb_000347_070 0.0764766083 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000617_180 0.0783350372 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
14 Hb_000466_140 0.0791136546 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
15 Hb_007645_100 0.0798016215 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
16 Hb_002301_300 0.0800361705 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
17 Hb_005618_050 0.080707413 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
18 Hb_103012_010 0.0818698258 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
19 Hb_000544_010 0.0829932825 - - PREDICTED: GPI mannosyltransferase 1 [Jatropha curcas]
20 Hb_000260_170 0.0832150811 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]

Gene co-expression network

sample Hb_003375_070 Hb_003375_070 Hb_001135_220 Hb_001135_220 Hb_003375_070--Hb_001135_220 Hb_000139_370 Hb_000139_370 Hb_003375_070--Hb_000139_370 Hb_011930_160 Hb_011930_160 Hb_003375_070--Hb_011930_160 Hb_002273_120 Hb_002273_120 Hb_003375_070--Hb_002273_120 Hb_003025_110 Hb_003025_110 Hb_003375_070--Hb_003025_110 Hb_007632_240 Hb_007632_240 Hb_003375_070--Hb_007632_240 Hb_005098_010 Hb_005098_010 Hb_001135_220--Hb_005098_010 Hb_000342_130 Hb_000342_130 Hb_001135_220--Hb_000342_130 Hb_004414_060 Hb_004414_060 Hb_001135_220--Hb_004414_060 Hb_003847_130 Hb_003847_130 Hb_001135_220--Hb_003847_130 Hb_123915_040 Hb_123915_040 Hb_001135_220--Hb_123915_040 Hb_172632_040 Hb_172632_040 Hb_000139_370--Hb_172632_040 Hb_000915_260 Hb_000915_260 Hb_000139_370--Hb_000915_260 Hb_010174_040 Hb_010174_040 Hb_000139_370--Hb_010174_040 Hb_000139_370--Hb_007632_240 Hb_000139_370--Hb_002273_120 Hb_003163_020 Hb_003163_020 Hb_011930_160--Hb_003163_020 Hb_001946_010 Hb_001946_010 Hb_011930_160--Hb_001946_010 Hb_004619_030 Hb_004619_030 Hb_011930_160--Hb_004619_030 Hb_011930_160--Hb_003025_110 Hb_000193_190 Hb_000193_190 Hb_011930_160--Hb_000193_190 Hb_103012_010 Hb_103012_010 Hb_011930_160--Hb_103012_010 Hb_009529_030 Hb_009529_030 Hb_002273_120--Hb_009529_030 Hb_002785_050 Hb_002785_050 Hb_002273_120--Hb_002785_050 Hb_003010_020 Hb_003010_020 Hb_002273_120--Hb_003010_020 Hb_032050_040 Hb_032050_040 Hb_002273_120--Hb_032050_040 Hb_017295_010 Hb_017295_010 Hb_002273_120--Hb_017295_010 Hb_004410_030 Hb_004410_030 Hb_003025_110--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_003025_110--Hb_000011_200 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_007632_240--Hb_003847_130 Hb_000638_120 Hb_000638_120 Hb_007632_240--Hb_000638_120 Hb_003438_050 Hb_003438_050 Hb_007632_240--Hb_003438_050 Hb_007632_240--Hb_003025_110 Hb_007632_240--Hb_004410_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.74891 1.88888 2.37948 2.93242 5.17046 4.05911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30171 2.5742 2.33396 3.5756 3.18776

CAGE analysis