Hb_003375_080

Information

Type -
Description -
Location Contig3375: 126679-136522
Sequence    

Annotation

kegg
ID tcc:TCM_016714
description Uncharacterized protein isoform 1
nr
ID XP_012083868.1
description PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JVR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19464 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35315: 126688-136141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003375_080 0.0 - - PREDICTED: uncharacterized protein LOC105643382 isoform X1 [Jatropha curcas]
2 Hb_185080_010 0.1327857934 - - -
3 Hb_001004_010 0.1348877934 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010589_130 0.1371629294 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
5 Hb_078901_010 0.1420534479 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
6 Hb_000819_040 0.1461504098 - - ATP binding protein, putative [Ricinus communis]
7 Hb_009476_010 0.1493187419 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
8 Hb_002973_040 0.1498885993 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
9 Hb_000780_110 0.1517817281 - - cation-transporting atpase plant, putative [Ricinus communis]
10 Hb_000059_260 0.152770513 - - PREDICTED: LOW QUALITY PROTEIN: peroxidase 60 [Jatropha curcas]
11 Hb_000247_150 0.1551670723 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
12 Hb_008143_020 0.1555678986 - - PREDICTED: rhomboid-like protease 2 [Jatropha curcas]
13 Hb_000363_110 0.1565404059 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
14 Hb_012423_020 0.1578879066 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
15 Hb_000465_100 0.1635099542 - - catalytic, putative [Ricinus communis]
16 Hb_011287_020 0.1646506165 - - ATP binding protein, putative [Ricinus communis]
17 Hb_009247_020 0.1659442227 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
18 Hb_002234_200 0.1660086283 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
19 Hb_002849_030 0.1662991685 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
20 Hb_077995_010 0.1665020908 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_003375_080 Hb_003375_080 Hb_185080_010 Hb_185080_010 Hb_003375_080--Hb_185080_010 Hb_001004_010 Hb_001004_010 Hb_003375_080--Hb_001004_010 Hb_010589_130 Hb_010589_130 Hb_003375_080--Hb_010589_130 Hb_078901_010 Hb_078901_010 Hb_003375_080--Hb_078901_010 Hb_000819_040 Hb_000819_040 Hb_003375_080--Hb_000819_040 Hb_009476_010 Hb_009476_010 Hb_003375_080--Hb_009476_010 Hb_000434_050 Hb_000434_050 Hb_185080_010--Hb_000434_050 Hb_185080_010--Hb_078901_010 Hb_011287_020 Hb_011287_020 Hb_185080_010--Hb_011287_020 Hb_016404_010 Hb_016404_010 Hb_185080_010--Hb_016404_010 Hb_000805_150 Hb_000805_150 Hb_185080_010--Hb_000805_150 Hb_012496_010 Hb_012496_010 Hb_001004_010--Hb_012496_010 Hb_008143_020 Hb_008143_020 Hb_001004_010--Hb_008143_020 Hb_113396_020 Hb_113396_020 Hb_001004_010--Hb_113396_020 Hb_006907_020 Hb_006907_020 Hb_001004_010--Hb_006907_020 Hb_000422_050 Hb_000422_050 Hb_001004_010--Hb_000422_050 Hb_000340_060 Hb_000340_060 Hb_001004_010--Hb_000340_060 Hb_010589_130--Hb_078901_010 Hb_010589_130--Hb_000434_050 Hb_009040_010 Hb_009040_010 Hb_010589_130--Hb_009040_010 Hb_102100_010 Hb_102100_010 Hb_010589_130--Hb_102100_010 Hb_181824_010 Hb_181824_010 Hb_010589_130--Hb_181824_010 Hb_078901_010--Hb_000805_150 Hb_078901_010--Hb_000434_050 Hb_078901_010--Hb_009476_010 Hb_000245_270 Hb_000245_270 Hb_078901_010--Hb_000245_270 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250 Hb_000045_140 Hb_000045_140 Hb_000819_040--Hb_000045_140 Hb_000230_210 Hb_000230_210 Hb_000819_040--Hb_000230_210 Hb_000819_040--Hb_181824_010 Hb_000819_040--Hb_000340_060 Hb_181810_010 Hb_181810_010 Hb_000819_040--Hb_181810_010 Hb_009476_010--Hb_011287_020 Hb_032260_100 Hb_032260_100 Hb_009476_010--Hb_032260_100 Hb_009476_010--Hb_000805_150 Hb_009476_010--Hb_000422_050 Hb_029622_080 Hb_029622_080 Hb_009476_010--Hb_029622_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.564075 11.4873 2.88258 2.01283 0.0550642 0.3484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0437553 0 0 0.24847 1.27742

CAGE analysis