Hb_003376_040

Information

Type -
Description -
Location Contig3376: 33753-37302
Sequence    

Annotation

kegg
ID pop:POPTR_0016s08750g
description POPTRDRAFT_777498; hydrolase family protein
nr
ID XP_012082295.1
description PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K1Y5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16467 PE=4 SV=1
Gene Ontology
ID GO:0016787
description hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35321: 33401-37571
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_040 0.0 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
2 Hb_003929_160 0.0760258333 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
3 Hb_007380_070 0.0760316245 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_007908_020 0.0785991088 - - zinc finger family protein [Populus trichocarpa]
5 Hb_001862_190 0.0786443383 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
6 Hb_001396_180 0.0796487399 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
7 Hb_000096_090 0.0847972801 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
8 Hb_001269_680 0.0851925731 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
9 Hb_005539_350 0.0861830651 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001360_040 0.0894512417 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
11 Hb_003001_120 0.0897252031 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
12 Hb_004812_010 0.0903010909 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
13 Hb_000120_950 0.0912436481 - - PREDICTED: protein GRIP [Jatropha curcas]
14 Hb_005063_040 0.0919071532 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
15 Hb_011316_040 0.094462124 - - peptidase, putative [Ricinus communis]
16 Hb_006541_030 0.0955938131 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
17 Hb_000030_010 0.0963281597 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
18 Hb_001100_060 0.0968044353 - - glycoprotein 3-alpha-l-fucosyltransferase A, putative [Ricinus communis]
19 Hb_004324_310 0.0979617328 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006922_100 0.0982157369 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_040 Hb_003376_040 Hb_003929_160 Hb_003929_160 Hb_003376_040--Hb_003929_160 Hb_007380_070 Hb_007380_070 Hb_003376_040--Hb_007380_070 Hb_007908_020 Hb_007908_020 Hb_003376_040--Hb_007908_020 Hb_001862_190 Hb_001862_190 Hb_003376_040--Hb_001862_190 Hb_001396_180 Hb_001396_180 Hb_003376_040--Hb_001396_180 Hb_000096_090 Hb_000096_090 Hb_003376_040--Hb_000096_090 Hb_003001_120 Hb_003001_120 Hb_003929_160--Hb_003001_120 Hb_003929_160--Hb_007380_070 Hb_004109_090 Hb_004109_090 Hb_003929_160--Hb_004109_090 Hb_005539_350 Hb_005539_350 Hb_003929_160--Hb_005539_350 Hb_005663_060 Hb_005663_060 Hb_003929_160--Hb_005663_060 Hb_000926_280 Hb_000926_280 Hb_003929_160--Hb_000926_280 Hb_006541_030 Hb_006541_030 Hb_007380_070--Hb_006541_030 Hb_001671_020 Hb_001671_020 Hb_007380_070--Hb_001671_020 Hb_000398_180 Hb_000398_180 Hb_007380_070--Hb_000398_180 Hb_007380_070--Hb_005539_350 Hb_028872_140 Hb_028872_140 Hb_007380_070--Hb_028872_140 Hb_000025_200 Hb_000025_200 Hb_007908_020--Hb_000025_200 Hb_002027_130 Hb_002027_130 Hb_007908_020--Hb_002027_130 Hb_002477_160 Hb_002477_160 Hb_007908_020--Hb_002477_160 Hb_000120_950 Hb_000120_950 Hb_007908_020--Hb_000120_950 Hb_000001_020 Hb_000001_020 Hb_007908_020--Hb_000001_020 Hb_001584_330 Hb_001584_330 Hb_007908_020--Hb_001584_330 Hb_033153_050 Hb_033153_050 Hb_001862_190--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_001862_190--Hb_000134_090 Hb_006922_100 Hb_006922_100 Hb_001862_190--Hb_006922_100 Hb_001322_190 Hb_001322_190 Hb_001862_190--Hb_001322_190 Hb_005662_030 Hb_005662_030 Hb_001862_190--Hb_005662_030 Hb_007477_080 Hb_007477_080 Hb_001862_190--Hb_007477_080 Hb_001360_040 Hb_001360_040 Hb_001396_180--Hb_001360_040 Hb_001396_180--Hb_005539_350 Hb_001269_680 Hb_001269_680 Hb_001396_180--Hb_001269_680 Hb_153112_020 Hb_153112_020 Hb_001396_180--Hb_153112_020 Hb_001396_180--Hb_000096_090 Hb_000648_110 Hb_000648_110 Hb_000096_090--Hb_000648_110 Hb_001053_180 Hb_001053_180 Hb_000096_090--Hb_001053_180 Hb_000316_050 Hb_000316_050 Hb_000096_090--Hb_000316_050 Hb_003732_020 Hb_003732_020 Hb_000096_090--Hb_003732_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.615 7.17598 7.40451 8.34917 15.9787 21.5776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1884 16.673 23.2827 4.18374 7.81164

CAGE analysis