Hb_003376_070

Information

Type -
Description -
Location Contig3376: 56012-58650
Sequence    

Annotation

kegg
ID rcu:RCOM_0819420
description dolichyldiphosphatase, putative (EC:3.6.1.43)
nr
ID KJB62496.1
description hypothetical protein B456_009G419800 [Gossypium raimondii]
swissprot
ID Q6NLA5
description Lipid phosphate phosphatase gamma, chloroplastic OS=Arabidopsis thaliana GN=LPPG PE=1 SV=1
trembl
ID A0A0D2U3H6
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G419800 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lipid phosphate phosphatase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35326: 55846-58603
cDNA
(Sanger)
(ID:Location)		 035_L17.ab1: 55846-56660 , 037_A06.ab1: 55846-56611 , 043_E11.ab1: 55846-56545

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_070 0.0 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
2 Hb_003157_030 0.1437160906 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
3 Hb_003492_010 0.1454639783 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
4 Hb_002411_130 0.1461511694 - - PREDICTED: cytosolic sulfotransferase 15-like [Populus euphratica]
5 Hb_009119_030 0.1501538139 - - GMFP4 [Medicago truncatula]
6 Hb_002742_070 0.1504485191 - - PREDICTED: villin-4-like [Jatropha curcas]
7 Hb_130134_030 0.1508811407 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
8 Hb_171788_010 0.1512704598 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
9 Hb_116638_010 0.1537864648 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002815_060 0.1549492492 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
11 Hb_058381_010 0.1557695515 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
12 Hb_001040_120 0.1562457733 - - allantoinase, putative [Ricinus communis]
13 Hb_027420_050 0.1572002508 - - -
14 Hb_030328_010 0.1620526748 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
15 Hb_000886_060 0.1626942769 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
16 Hb_000441_160 0.1663307008 - - ARF GTPase activator, putative [Ricinus communis]
17 Hb_178041_010 0.1679598443 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
18 Hb_015354_010 0.1711878349 - - PREDICTED: B2 protein [Jatropha curcas]
19 Hb_083043_010 0.1713910673 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
20 Hb_001052_040 0.172828704 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003376_070 Hb_003376_070 Hb_003157_030 Hb_003157_030 Hb_003376_070--Hb_003157_030 Hb_003492_010 Hb_003492_010 Hb_003376_070--Hb_003492_010 Hb_002411_130 Hb_002411_130 Hb_003376_070--Hb_002411_130 Hb_009119_030 Hb_009119_030 Hb_003376_070--Hb_009119_030 Hb_002742_070 Hb_002742_070 Hb_003376_070--Hb_002742_070 Hb_130134_030 Hb_130134_030 Hb_003376_070--Hb_130134_030 Hb_006501_020 Hb_006501_020 Hb_003157_030--Hb_006501_020 Hb_002815_060 Hb_002815_060 Hb_003157_030--Hb_002815_060 Hb_003157_030--Hb_002742_070 Hb_031069_020 Hb_031069_020 Hb_003157_030--Hb_031069_020 Hb_141547_010 Hb_141547_010 Hb_003157_030--Hb_141547_010 Hb_003492_010--Hb_031069_020 Hb_003492_010--Hb_002411_130 Hb_003492_010--Hb_002742_070 Hb_001907_060 Hb_001907_060 Hb_003492_010--Hb_001907_060 Hb_010128_120 Hb_010128_120 Hb_003492_010--Hb_010128_120 Hb_000159_110 Hb_000159_110 Hb_002411_130--Hb_000159_110 Hb_001752_040 Hb_001752_040 Hb_002411_130--Hb_001752_040 Hb_002411_130--Hb_009119_030 Hb_121467_010 Hb_121467_010 Hb_002411_130--Hb_121467_010 Hb_001767_120 Hb_001767_120 Hb_002411_130--Hb_001767_120 Hb_002320_070 Hb_002320_070 Hb_009119_030--Hb_002320_070 Hb_000130_190 Hb_000130_190 Hb_009119_030--Hb_000130_190 Hb_009119_030--Hb_000159_110 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_009119_030--Hb_121467_010 Hb_002742_070--Hb_002815_060 Hb_178041_010 Hb_178041_010 Hb_002742_070--Hb_178041_010 Hb_002742_070--Hb_010128_120 Hb_000330_160 Hb_000330_160 Hb_002742_070--Hb_000330_160 Hb_011953_030 Hb_011953_030 Hb_002742_070--Hb_011953_030 Hb_130134_020 Hb_130134_020 Hb_130134_030--Hb_130134_020 Hb_130134_030--Hb_178041_010 Hb_088428_010 Hb_088428_010 Hb_130134_030--Hb_088428_010 Hb_130134_030--Hb_121467_010 Hb_077211_010 Hb_077211_010 Hb_130134_030--Hb_077211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4267 22.1361 3.26951 21.2299 28.4291 59.2885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66456 6.05932 5.9616 5.08202 3.78242

CAGE analysis