Hb_003376_130

Information

Type transcription factor
Description TF Family: S1Fa-like
Location Contig3376: 95939-98418
Sequence    

Annotation

kegg
ID rcu:RCOM_0819270
description DNA-binding protein S1FA, putative
nr
ID XP_002525167.1
description DNA-binding protein S1FA, putative [Ricinus communis]
swissprot
ID Q42337
description DNA-binding protein S1FA2 OS=Arabidopsis thaliana GN=S1FA2 PE=3 SV=2
trembl
ID B9SGP8
description DNA-binding protein S1FA, putative OS=Ricinus communis GN=RCOM_0819270 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna-binding protein s1fa-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35331: 96021-98419 , PASA_asmbl_35332: 98189-98419 , PASA_asmbl_35333: 97916-98151
cDNA
(Sanger)
(ID:Location)		 009_N23.ab1: 96141-98419 , 011_D04.ab1: 96198-98403 , 042_P10.ab1: 96141-98419 , 044_B07.ab1: 96198-98426 , 048_L16.ab1: 96198-98403

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_130 0.0 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
2 Hb_000329_330 0.0608688294 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
3 Hb_000212_260 0.0706565433 - - acyl-carrier-protein [Triadica sebifera]
4 Hb_148930_010 0.0710146101 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
5 Hb_003086_100 0.0736365135 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
6 Hb_148200_010 0.073993651 - - hypothetical protein 33 [Hevea brasiliensis]
7 Hb_002571_020 0.0776308795 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
8 Hb_089140_100 0.0786803326 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
9 Hb_002107_120 0.0787279505 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
10 Hb_000193_200 0.0808222346 - - rotamase, putative [Ricinus communis]
11 Hb_001433_050 0.0816741945 - - 60S ribosomal protein L18, putative [Ricinus communis]
12 Hb_004156_040 0.0831987707 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
13 Hb_002835_320 0.084248999 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_000069_100 0.0843685716 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009851_100 0.0849909373 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
16 Hb_010172_070 0.0852152364 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
17 Hb_001545_060 0.0858967822 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
18 Hb_001045_080 0.0897313145 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
19 Hb_001912_010 0.0899246083 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
20 Hb_007479_020 0.090449664 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_130 Hb_003376_130 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_148930_010 Hb_148930_010 Hb_003376_130--Hb_148930_010 Hb_003086_100 Hb_003086_100 Hb_003376_130--Hb_003086_100 Hb_148200_010 Hb_148200_010 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_006573_220 Hb_006573_220 Hb_000329_330--Hb_006573_220 Hb_000069_100 Hb_000069_100 Hb_000329_330--Hb_000069_100 Hb_000329_330--Hb_148200_010 Hb_003376_030 Hb_003376_030 Hb_000329_330--Hb_003376_030 Hb_002097_060 Hb_002097_060 Hb_000329_330--Hb_002097_060 Hb_000212_260--Hb_000069_100 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_010172_030 Hb_010172_030 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_001433_050 Hb_001433_050 Hb_148930_010--Hb_001433_050 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_148930_010--Hb_148200_010 Hb_003398_120 Hb_003398_120 Hb_148930_010--Hb_003398_120 Hb_012265_010 Hb_012265_010 Hb_003086_100--Hb_012265_010 Hb_003086_100--Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_003086_100--Hb_001383_060 Hb_002311_320 Hb_002311_320 Hb_003086_100--Hb_002311_320 Hb_010883_150 Hb_010883_150 Hb_003086_100--Hb_010883_150 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_148200_010--Hb_003376_030 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_002571_020--Hb_009851_100 Hb_000120_750 Hb_000120_750 Hb_002571_020--Hb_000120_750 Hb_000484_020 Hb_000484_020 Hb_002571_020--Hb_000484_020 Hb_001045_080 Hb_001045_080 Hb_002571_020--Hb_001045_080 Hb_003125_150 Hb_003125_150 Hb_002571_020--Hb_003125_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.8086 13.742 25.8579 36.7297 74.5746 67.8962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
208.958 230.258 131.396 63.0354 18.702

CAGE analysis